| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| emx3 | 0.231 | slc6a9 | -0.077 |
| fgf22 | 0.228 | si:ch73-265d7.2 | -0.077 |
| foxg1a | 0.198 | sox19a | -0.076 |
| wnt10a | 0.179 | fabp3 | -0.074 |
| cdon | 0.178 | si:ch73-21g5.7 | -0.070 |
| adamtsl5 | 0.160 | plp1a | -0.068 |
| rspo3 | 0.156 | ntn1a | -0.067 |
| msx1b | 0.153 | sulf2a | -0.065 |
| bmper | 0.150 | ptch2 | -0.063 |
| wnt7ba | 0.150 | foxb1a | -0.062 |
| zgc:110699 | 0.149 | sox21a | -0.060 |
| gdf10a | 0.145 | CABZ01093502.1 | -0.058 |
| bmp6 | 0.139 | slc6a1b | -0.056 |
| lhx2b | 0.139 | XLOC-003689 | -0.054 |
| cdh6 | 0.135 | irx3a | -0.054 |
| bmp4 | 0.134 | sb:cb81 | -0.054 |
| fam69c | 0.133 | npas1 | -0.054 |
| gas1a | 0.130 | pax7a | -0.053 |
| elfn1b | 0.128 | ephb3 | -0.051 |
| gdf7 | 0.127 | her4.2 | -0.051 |
| ezra | 0.126 | dbx1a | -0.051 |
| bcam | 0.125 | si:ch211-137a8.4 | -0.051 |
| gdf6a | 0.125 | prdm8 | -0.050 |
| lmx1a | 0.124 | CR751602.2 | -0.049 |
| msx3 | 0.123 | fgfr3 | -0.048 |
| wnt10b | 0.122 | wfikkn1 | -0.048 |
| fezf2 | 0.122 | sulf2b | -0.048 |
| BX469902.1 | 0.119 | dbx1b | -0.048 |
| c1qtnf5 | 0.117 | ntn1b | -0.047 |
| itih1 | 0.116 | her4.4 | -0.046 |
| zic5 | 0.115 | gsx1 | -0.045 |
| rspo2 | 0.114 | irx5a | -0.045 |
| zic2b | 0.112 | irx1a | -0.045 |
| zic1 | 0.111 | nes | -0.044 |
| znf296 | 0.110 | si:ch73-30b17.2 | -0.043 |