| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic2a | 0.222 | elavl3 | -0.142 |
| wnt10b | 0.221 | myt1b | -0.125 |
| wls | 0.216 | rtn1a | -0.122 |
| msx1b | 0.214 | elavl4 | -0.118 |
| zic1 | 0.210 | stx1b | -0.118 |
| lmx1a | 0.208 | gng3 | -0.117 |
| pmp22a | 0.207 | gng2 | -0.116 |
| zic5 | 0.206 | stxbp1a | -0.115 |
| bmp5 | 0.205 | snap25a | -0.113 |
| rspo3 | 0.203 | tuba1c | -0.112 |
| msx3 | 0.200 | sncb | -0.110 |
| zic2b | 0.199 | stmn1b | -0.110 |
| gas1a | 0.193 | si:dkey-276j7.1 | -0.110 |
| boc | 0.192 | ptmaa | -0.108 |
| fzd10 | 0.191 | vamp2 | -0.108 |
| slit2 | 0.182 | cplx2 | -0.105 |
| efnb2a | 0.178 | tmsb | -0.103 |
| col7a1l | 0.178 | syt2a | -0.102 |
| npr3 | 0.177 | dpysl3 | -0.102 |
| gdf10a | 0.177 | rtn1b | -0.102 |
| vasna | 0.177 | tmeff1b | -0.100 |
| tpm4a | 0.169 | jagn1a | -0.100 |
| b3gnt7l | 0.167 | tubb5 | -0.100 |
| id1 | 0.167 | tmem59l | -0.100 |
| cdh6 | 0.165 | nsg2 | -0.099 |
| wnt11r | 0.161 | hmgb3a | -0.099 |
| arxa | 0.160 | zc4h2 | -0.099 |
| bmp6 | 0.160 | stmn2a | -0.098 |
| mdka | 0.158 | nova1 | -0.097 |
| chl1a | 0.157 | mllt11 | -0.097 |
| lmx1bb | 0.155 | onecut1 | -0.097 |
| her9 | 0.154 | zgc:65894 | -0.096 |
| adamtsl5 | 0.153 | ywhag2 | -0.096 |
| crabp2a | 0.152 | id4 | -0.096 |
| col12a1a | 0.151 | gap43 | -0.095 |