| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.254 | fgfbp2b | -0.170 |
| fmoda | 0.249 | foxc1b | -0.155 |
| rhag | 0.242 | cnmd | -0.136 |
| gas1a | 0.232 | foxf2a | -0.132 |
| msx3 | 0.228 | ptch2 | -0.123 |
| ca6 | 0.221 | col2a1a | -0.119 |
| tpbga | 0.218 | foxd1 | -0.117 |
| ccdc80l2 | 0.217 | ecrg4a | -0.114 |
| prrx1b | 0.212 | matn1 | -0.110 |
| zfhx3 | 0.195 | col9a3 | -0.109 |
| csf1b | 0.190 | barx1 | -0.108 |
| csf1a | 0.187 | col11a2 | -0.108 |
| tgm2b | 0.185 | col9a1a | -0.105 |
| alx4a | 0.184 | col9a2 | -0.105 |
| boc | 0.184 | epyc | -0.105 |
| adma | 0.183 | foxf1 | -0.104 |
| wls | 0.180 | mia | -0.103 |
| wnt11r | 0.176 | foxd2 | -0.101 |
| msx2b | 0.175 | foxf2b | -0.100 |
| CR855375.3 | 0.174 | foxl1 | -0.096 |
| kitlga | 0.169 | sox9a | -0.095 |
| zfhx4 | 0.169 | hpgd | -0.093 |
| col6a4a | 0.166 | zgc:162612 | -0.093 |
| lamc3 | 0.166 | fxyd1 | -0.092 |
| si:ch211-67e16.11 | 0.164 | snorc | -0.085 |
| twist3 | 0.159 | acana | -0.085 |
| ism1 | 0.157 | otos | -0.085 |
| ccdc80l1 | 0.157 | tnxba | -0.085 |
| lmx1ba | 0.156 | wisp3 | -0.084 |
| slit3 | 0.156 | nkx3.2 | -0.084 |
| col6a3 | 0.155 | trabd2a | -0.084 |
| mxra5b | 0.153 | wwp2 | -0.083 |
| capn12 | 0.152 | foxc1a | -0.083 |
| zic1 | 0.151 | six2a | -0.081 |
| ism2a | 0.151 | myl9a | -0.077 |