| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| barhl2 | 0.400 | vim | -0.082 |
| pitx3 | 0.297 | si:ch73-265d7.2 | -0.073 |
| barhl1a | 0.296 | sp8b | -0.058 |
| pitx2 | 0.291 | col11a1a | -0.056 |
| lhx9 | 0.251 | ndnf | -0.055 |
| atoh1b | 0.224 | gas1b | -0.053 |
| dmrta2 | 0.178 | mdka | -0.052 |
| shha | 0.166 | cdx4 | -0.048 |
| nrn1a | 0.166 | col4a5 | -0.047 |
| nkx2.4a | 0.160 | atp1a1b | -0.047 |
| lmx1ba | 0.144 | nkx6.1 | -0.046 |
| ralyl | 0.136 | irx3b | -0.045 |
| emx2 | 0.131 | sp8a | -0.044 |
| LOC100537342 | 0.125 | si:dkeyp-110a12.4 | -0.044 |
| lhx2b | 0.123 | pax3a | -0.044 |
| prdx1 | 0.120 | spry4 | -0.044 |
| im:7152348 | 0.117 | pleca | -0.044 |
| nkx2.4b | 0.117 | nr2f5 | -0.044 |
| sox11b | 0.115 | gbx1 | -0.043 |
| ebf3a | 0.114 | ptprfb | -0.043 |
| lmx1bb | 0.111 | endouc | -0.043 |
| scrt1a | 0.105 | cd63 | -0.042 |
| wnt8b | 0.099 | tes | -0.042 |
| bcl11aa | 0.099 | bicc2 | -0.041 |
| uncx | 0.098 | col28a2a | -0.040 |
| scrt1b | 0.098 | XLOC-001964 | -0.040 |
| rasl11a | 0.088 | pkd1b | -0.039 |
| sox11a | 0.087 | dhrs3b | -0.039 |
| frzb | 0.085 | col18a1a | -0.039 |
| pou3f1 | 0.083 | col4a6 | -0.039 |
| pou4f1 | 0.080 | anxa11b | -0.039 |
| adcyap1b | 0.079 | scube2 | -0.039 |
| dvl1b | 0.079 | cdh11 | -0.039 |
| im:7142702 | 0.078 | wnt5b | -0.038 |
| CU634008.1 | 0.078 | zgc:113531 | -0.038 |