| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.268 | sox3 | -0.235 |
| tbxta | 0.265 | id1 | -0.160 |
| wnt11f2 | 0.255 | hmgb2a | -0.158 |
| fscn1a | 0.251 | sox19a | -0.156 |
| FP102169.1 | 0.246 | cxcr4b | -0.137 |
| osr1 | 0.245 | aldob | -0.126 |
| mespab | 0.245 | zic2b | -0.123 |
| dkk1b | 0.236 | crabp2b | -0.117 |
| msgn1 | 0.232 | NC-002333.4 | -0.114 |
| ndr2 | 0.231 | asb11 | -0.111 |
| foxa | 0.229 | sox2 | -0.108 |
| sebox | 0.223 | pkdccb | -0.108 |
| gata5 | 0.218 | si:ch211-152c2.3 | -0.104 |
| fgf8a | 0.215 | si:ch73-1a9.3 | -0.103 |
| snai1a | 0.211 | anp32b | -0.102 |
| cyp27c1 | 0.211 | si:ch1073-80i24.3 | -0.098 |
| lft1 | 0.210 | si:dkey-56m19.5 | -0.095 |
| zic2a | 0.209 | si:ch211-222l21.1 | -0.093 |
| trib3 | 0.206 | foxd5 | -0.093 |
| cth1 | 0.206 | polr3gla | -0.092 |
| BX927327.1 | 0.206 | pfkfb4b | -0.090 |
| ddit4 | 0.203 | sfrp1a | -0.090 |
| aldh1a2 | 0.202 | alcamb | -0.088 |
| aplnrb | 0.200 | sult6b1 | -0.087 |
| pitx2 | 0.199 | LOC108190024 | -0.083 |
| dusp4 | 0.198 | shisa2a | -0.081 |
| efnb2b | 0.197 | kazald2 | -0.080 |
| gata6 | 0.194 | anp32a | -0.080 |
| efnb2a | 0.189 | sb:cb81 | -0.077 |
| ism1 | 0.189 | prdm14 | -0.077 |
| lft2 | 0.188 | add3b | -0.076 |
| tbx16 | 0.187 | tfap2a | -0.075 |
| mespaa | 0.179 | si:ch73-141c7.1 | -0.074 |
| flrt3 | 0.178 | atp1b1a | -0.072 |
| kirrel3l | 0.178 | gpd1b | -0.072 |