| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zic2a | 0.273 | elavl3 | -0.075 |
| zic1 | 0.266 | myt1b | -0.068 |
| zic5 | 0.262 | gng2 | -0.064 |
| zic3 | 0.259 | gng3 | -0.063 |
| zic4 | 0.222 | h2afx1 | -0.062 |
| si:ch211-69b22.5 | 0.211 | stxbp1a | -0.061 |
| gdf10a | 0.208 | ntn1a | -0.060 |
| BX469902.1 | 0.195 | sp8b | -0.059 |
| clybl | 0.188 | elavl4 | -0.059 |
| zic2b | 0.179 | sncb | -0.059 |
| fzd10 | 0.179 | tuba1c | -0.058 |
| msx1b | 0.158 | hapln1a | -0.058 |
| msx3 | 0.157 | tubb5 | -0.057 |
| wnt10b | 0.152 | stx1b | -0.057 |
| mdka | 0.148 | snap25a | -0.056 |
| gas1a | 0.145 | ptmaa | -0.055 |
| boc | 0.144 | syt2a | -0.055 |
| cdon | 0.137 | cplx2 | -0.054 |
| rspo1 | 0.129 | myt1a | -0.054 |
| mdkb | 0.128 | rtn1a | -0.054 |
| fabp11a | 0.127 | calm2a | -0.054 |
| wls | 0.124 | zc4h2 | -0.053 |
| pax3a | 0.122 | jagn1a | -0.053 |
| atoh1c | 0.121 | tmeff1b | -0.053 |
| tnfrsf19 | 0.121 | calm1a | -0.053 |
| pdgfaa | 0.120 | vamp2 | -0.053 |
| rspo2 | 0.119 | LOC100537384 | -0.052 |
| BX005454.1 | 0.117 | dpysl3 | -0.052 |
| axin2 | 0.117 | rtn1b | -0.052 |
| lmx1a | 0.112 | nkx6.1 | -0.052 |
| rspo3 | 0.110 | sulf2b | -0.052 |
| olig3 | 0.108 | onecut1 | -0.052 |
| tpbga | 0.103 | ywhah | -0.051 |
| neo1a | 0.098 | mllt11 | -0.051 |
| adamtsl5 | 0.097 | id4 | -0.051 |