| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zfhx3 | 0.257 | fgfbp2b | -0.118 |
| msx1b | 0.176 | mia | -0.113 |
| fmoda | 0.174 | snorc | -0.111 |
| cdon | 0.169 | acana | -0.100 |
| pitx1 | 0.167 | matn1 | -0.099 |
| gpm6ab | 0.156 | cnmd | -0.098 |
| tfap2b | 0.149 | wisp3 | -0.091 |
| gpc1a | 0.147 | pcolceb | -0.088 |
| alx4a | 0.146 | hpgd | -0.088 |
| pitx2 | 0.144 | tnxba | -0.088 |
| elavl3 | 0.143 | ptgdsa | -0.087 |
| stmn1b | 0.143 | si:dkey-151g10.6 | -0.087 |
| tkta | 0.142 | col11a2 | -0.083 |
| atp1a3a | 0.141 | epyc | -0.082 |
| tpbga | 0.139 | si:dkey-19b23.8 | -0.082 |
| msx3 | 0.138 | hapln1b | -0.081 |
| lmx1ba | 0.137 | otos | -0.081 |
| nova2 | 0.134 | emilin3a | -0.078 |
| pcbd1 | 0.133 | ppp1r1c | -0.078 |
| lmx1bb | 0.131 | ucmab | -0.076 |
| rtn1a | 0.130 | foxc1b | -0.076 |
| gpm6aa | 0.130 | si:ch211-156j16.1 | -0.076 |
| spock3 | 0.129 | barx1 | -0.075 |
| qdpra | 0.129 | eps8l2 | -0.075 |
| kdm6bb | 0.128 | si:dkey-6n6.1 | -0.075 |
| tuba1c | 0.127 | acanb | -0.074 |
| epb41a | 0.126 | meltf | -0.073 |
| gng3 | 0.126 | sept8b | -0.073 |
| lrrc58a | 0.122 | itih1 | -0.071 |
| pitx3 | 0.122 | col9a3 | -0.070 |
| ndrg4 | 0.121 | pdcd6 | -0.069 |
| rtn1b | 0.120 | zgc:162879 | -0.067 |
| twist3 | 0.120 | rplp1 | -0.067 |
| dbn1 | 0.119 | si:dkey-262k9.2 | -0.067 |
| cadm4 | 0.118 | tdh | -0.067 |