| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| zfhx3 | 0.547 | XLOC-003690 | -0.275 |
| si:ch73-386h18.1 | 0.400 | id1 | -0.250 |
| lhx1a | 0.349 | sox3 | -0.237 |
| pou2f2a | 0.342 | her15.1 | -0.233 |
| LOC100537384 | 0.341 | mdka | -0.230 |
| myt1b | 0.337 | hmgb2a | -0.213 |
| nsg2 | 0.334 | cldn5a | -0.206 |
| elavl3 | 0.334 | XLOC-003689 | -0.198 |
| stx1b | 0.329 | her4.1 | -0.196 |
| zc4h2 | 0.325 | vamp3 | -0.194 |
| gng2 | 0.321 | fabp7a | -0.193 |
| gng3 | 0.319 | zgc:56493 | -0.187 |
| stxbp1a | 0.317 | her4.2 | -0.184 |
| mab21l2 | 0.315 | notch3 | -0.184 |
| sncb | 0.311 | selenoh | -0.182 |
| elavl4 | 0.308 | sox19a | -0.180 |
| cplx2 | 0.303 | msi1 | -0.179 |
| nrxn1a | 0.299 | msna | -0.177 |
| ywhah | 0.297 | her12 | -0.176 |
| vamp2 | 0.295 | gpm6bb | -0.175 |
| tnrc6c1 | 0.291 | atp1a1b | -0.173 |
| rtn1b | 0.289 | COX7A2 (1 of many) | -0.173 |
| atp6v0cb | 0.288 | cd82a | -0.172 |
| stmn1b | 0.287 | CU467822.1 | -0.172 |
| nrn1a | 0.287 | CR848047.1 | -0.170 |
| ube2ql1 | 0.286 | XLOC-003692 | -0.169 |
| csdc2a | 0.283 | ranbp1 | -0.168 |
| tmem59l | 0.281 | btg2 | -0.165 |
| lhx5 | 0.276 | tuba8l4 | -0.164 |
| atp1a3a | 0.276 | dut | -0.164 |
| rtn1a | 0.275 | si:ch211-286b5.5 | -0.164 |
| rbfox3a | 0.275 | gas1b | -0.163 |
| syt2a | 0.273 | cdx4 | -0.163 |
| gpm6ab | 0.266 | ccng1 | -0.162 |
| adam22 | 0.265 | pcna | -0.162 |