| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx4 | 0.345 | mdkb | -0.088 |
| LHX3 | 0.237 | CR383676.1 | -0.086 |
| rx2 | 0.204 | sox19a | -0.073 |
| rx1 | 0.203 | sox3 | -0.067 |
| shox2 | 0.193 | NC-002333.4 | -0.067 |
| crip3 | 0.142 | ctnnb1 | -0.062 |
| nkx6.1 | 0.132 | XLOC-003689 | -0.060 |
| XLOC-003718 | 0.130 | XLOC-003690 | -0.054 |
| shox | 0.118 | XLOC-003692 | -0.051 |
| hmx4 | 0.104 | msna | -0.051 |
| foxd1 | 0.097 | abhd6a | -0.051 |
| si:dkey-238o13.4 | 0.092 | zgc:165461 | -0.051 |
| hmx1 | 0.092 | her8a | -0.050 |
| myca | 0.091 | tspan7 | -0.050 |
| si:ch211-237l4.6 | 0.088 | her2 | -0.049 |
| tbx5a | 0.086 | wls | -0.049 |
| nkx6.3 | 0.083 | ctsla | -0.049 |
| tbx2a | 0.082 | her4.1 | -0.049 |
| sox14 | 0.082 | ucp2 | -0.048 |
| six3b | 0.080 | akap12b | -0.048 |
| aamp | 0.072 | slc32a1 | -0.048 |
| tbx2b | 0.072 | notch3 | -0.047 |
| pax6b | 0.070 | pax3a | -0.047 |
| fabp11a | 0.069 | cldn5a | -0.047 |
| BX470117.1 | 0.068 | sdc4 | -0.047 |
| cx43 | 0.068 | pnrc2 | -0.047 |
| meis3 | 0.067 | tmsb4x | -0.047 |
| mab21l2 | 0.067 | actb1 | -0.046 |
| tjp2b | 0.066 | actb2 | -0.046 |
| atic | 0.066 | her4.2 | -0.045 |
| sox18 | 0.063 | si:ch211-212k18.5 | -0.045 |
| AL954322.2 | 0.063 | fosab | -0.045 |
| aldh1a2 | 0.063 | bcam | -0.044 |
| eef1db | 0.061 | si:dkey-56m19.5 | -0.044 |
| fzd5 | 0.061 | alcamb | -0.044 |