| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.515 | sox3 | -0.318 |
| wnt11f2 | 0.476 | cited4b | -0.223 |
| BX927327.1 | 0.400 | cxcr4b | -0.192 |
| cdx4 | 0.392 | inka1a | -0.187 |
| eve1 | 0.377 | shisa2a | -0.176 |
| hes6 | 0.373 | sox19a | -0.176 |
| wnt5b | 0.363 | asb11 | -0.166 |
| osr1 | 0.360 | cxcr4a | -0.146 |
| sebox | 0.350 | id1 | -0.139 |
| mespab | 0.348 | stk35l | -0.138 |
| aldh1a2 | 0.323 | si:ch211-173m16.2 | -0.132 |
| ndr2 | 0.321 | lfng | -0.122 |
| wu:fb97g03 | 0.317 | glulb | -0.119 |
| FP102169.1 | 0.295 | zic2b | -0.119 |
| fgf8a | 0.292 | zgc:64022 | -0.118 |
| p4ha2 | 0.290 | zgc:100951 | -0.118 |
| lhx1a | 0.290 | nanog | -0.118 |
| im:7138239 | 0.276 | blf | -0.115 |
| msgn1 | 0.275 | dnajb1b | -0.114 |
| sp5a | 0.272 | foxd5 | -0.112 |
| notum1a | 0.265 | sfrp1a | -0.112 |
| fscn1a | 0.262 | sox11a | -0.111 |
| tbx16 | 0.258 | foxh1 | -0.111 |
| cyp27c1 | 0.258 | cldnd | -0.110 |
| lft1 | 0.257 | gpd1b | -0.110 |
| dkk1b | 0.257 | mkrn4 | -0.110 |
| zic2a | 0.257 | si:dkey-11o15.10 | -0.109 |
| aplnrb | 0.246 | LOC101885477 | -0.109 |
| si:dkeyp-2e4.3 | 0.240 | si:ch1073-80i24.3 | -0.109 |
| zswim5 | 0.233 | si:ch211-170d8.2 | -0.108 |
| rasgef1ba | 0.230 | zgc:113424 | -0.107 |
| vent | 0.225 | ccna1 | -0.107 |
| flrt3 | 0.224 | snai2 | -0.107 |
| mespaa | 0.224 | kazald2 | -0.105 |
| nradd | 0.218 | cited2 | -0.103 |