| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| twist2 | 0.315 | pitx2 | -0.161 |
| cdkn1ca | 0.307 | bambia | -0.149 |
| cdx4 | 0.294 | klf17 | -0.148 |
| epha2a | 0.280 | zgc:174153 | -0.147 |
| arl4aa | 0.244 | ctslb | -0.142 |
| ppp1r14c | 0.244 | epcam | -0.140 |
| irx3a | 0.239 | si:dkey-269i1.4 | -0.135 |
| large2 | 0.239 | si:dkey-239j18.2 | -0.134 |
| noto | 0.238 | fzd8b | -0.131 |
| rgma | 0.237 | shisa2a | -0.131 |
| sall1a | 0.234 | gsc | -0.131 |
| ntd5 | 0.234 | si:ch73-160h15.3 | -0.127 |
| epha4a | 0.234 | spint2 | -0.127 |
| si:ch211-27e6.1 | 0.233 | si:dkey-239j18.3 | -0.122 |
| sp5l | 0.233 | ap1s3b | -0.122 |
| pmp22b | 0.233 | he1.2 | -0.120 |
| dhrs3b | 0.230 | icn | -0.116 |
| gdf11 | 0.229 | si:dkey-68o6.5 | -0.116 |
| fadd | 0.227 | h1m | -0.115 |
| tbxta | 0.225 | timp4.1 | -0.114 |
| foxa2 | 0.224 | krt8 | -0.114 |
| cdh2 | 0.222 | capns1a | -0.113 |
| zeb2a | 0.217 | si:ch1073-80i24.3 | -0.113 |
| nradd | 0.216 | mctp2b | -0.113 |
| fn1a | 0.215 | oclna | -0.112 |
| zgc:92242 | 0.214 | ccne1 | -0.112 |
| wnt5b | 0.206 | fzd8a | -0.111 |
| plp2 | 0.203 | tbx16 | -0.111 |
| qkia | 0.194 | id3 | -0.110 |
| p4ha2 | 0.194 | cldn7b | -0.110 |
| fbln2 | 0.193 | he1.1 | -0.109 |
| zgc:66433 | 0.192 | nanog | -0.108 |
| emid1 | 0.191 | si:dkey-269i1.3 | -0.107 |
| irx5a | 0.190 | zgc:92380 | -0.107 |
| lypd6b | 0.190 | wu:fa26c03 | -0.107 |