sigirr (axial mesoderm): Daniocell

Daniocell

sigirr (axial mesoderm)

single immunoglobulin and toll-interleukin 1 receptor (TIR) domain ZFIN

Gene expression UMAP

Download UMAP

Other cell groups

all cells	blastomeres	PGCs	endoderm	axial mesoderm
muscle	mural cells / non-skeletal muscle	mesenchyme	hematopoietic / vasculature	pronephros
neural	spinal cord / glia	eye	taste / olfactory	otic / lateral line
epidermis	periderm	fin	ionocytes / mucous	pigment cells

Expression by stage/cluster

Correlated gene expression

Positive correlation		Negative correlation
Gene	r	Gene	r
ptprjb.1	0.559	ptmab	-0.099
GBGT1 (1 of many)	0.532	h2afvb	-0.076
si:ch1073-464p5.5	0.531	qkia	-0.066
lrrc66	0.475	rbm8a	-0.064
zgc:136963	0.471	ran	-0.063
si:ch211-153b23.3	0.463	si:ch73-281n10.2	-0.062
atp1a1a.5	0.439	hnrnpaba	-0.060
cdh27	0.404	khdrbs1a	-0.060
tmem176l.2	0.398	pabpc1a	-0.059
XLOC-043935	0.385	cx43.4	-0.058
slc12a10.3	0.365	snrpf	-0.057
stc2b	0.364	selenof	-0.057
soul2	0.352	hnrnpabb	-0.056
ccdc85a	0.349	seta	-0.055
etf1a	0.343	h3f3d	-0.054
cers3a	0.343	ddx39ab	-0.053
LOC101882689	0.342	hmga1a	-0.053
il2rgb	0.338	nucks1a	-0.052
CR931782.2	0.337	kdelr2a	-0.052
hhla2a.2	0.319	hnrnpa0b	-0.052
si:ch73-308m11.1	0.316	si:ch211-288g17.3	-0.052
BX510922.2	0.311	setb	-0.051
fam19a4b	0.302	ilf2	-0.050
zbtb7b	0.297	marcksl1b	-0.050
cxcl20	0.297	hmgb2b	-0.050
si:ch211-240l19.6	0.292	cbx3a	-0.050
kl	0.292	msna	-0.050
BX663525.2	0.287	asph	-0.049
si:ch211-66k16.28	0.286	serbp1a	-0.049
LOC100537138	0.268	snrpe	-0.049
si:ch211-137i24.10	0.265	cycsb	-0.049
erbb3b	0.262	snu13b	-0.049
ncf4	0.259	hnrnpa1a	-0.048
alox5a	0.258	sap18	-0.048
cyp1a	0.249	npm1a	-0.048