| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| sall3a | 0.143 | zic1 | -0.048 |
| sall3b | 0.116 | chd3 | -0.046 |
| robo4 | 0.108 | lhx9 | -0.042 |
| onecut3a | 0.102 | mir181b-3 | -0.041 |
| onecut1 | 0.101 | zic2a | -0.040 |
| lin28a | 0.101 | zfhx4 | -0.037 |
| notch3 | 0.096 | zic5 | -0.037 |
| si:ch211-215d8.2 | 0.095 | zic4 | -0.037 |
| npas1 | 0.095 | msx1b | -0.036 |
| si:ch73-21g5.7 | 0.095 | sox14 | -0.035 |
| sulf2a | 0.095 | lef1 | -0.035 |
| sp8b | 0.094 | roraa | -0.035 |
| zgc:165461 | 0.093 | mdkb | -0.034 |
| XLOC-016165 | 0.092 | snap25b | -0.033 |
| si:ch211-57n23.4 | 0.092 | barhl1a | -0.033 |
| gpm6bb | 0.090 | ptmaa | -0.033 |
| nrarpb | 0.090 | id2a | -0.033 |
| nes | 0.088 | myca | -0.033 |
| notch1b | 0.088 | sox4a | -0.032 |
| plp1a | 0.086 | foxp2 | -0.032 |
| gfap | 0.086 | nfixb | -0.032 |
| sall2 | 0.084 | c1qbp | -0.031 |
| cd82a | 0.083 | zic3 | -0.031 |
| ptch2 | 0.082 | hnrnpr | -0.031 |
| atp1b4 | 0.076 | zfhx3 | -0.030 |
| vim | 0.076 | apoa2 | -0.030 |
| pkd2l1 | 0.076 | stmn1b | -0.030 |
| XLOC-003689 | 0.075 | cep112 | -0.030 |
| tubb2 | 0.075 | casz1 | -0.029 |
| ntn1a | 0.074 | cdon | -0.029 |
| sox21a | 0.074 | olig3 | -0.028 |
| sb:cb81 | 0.074 | otx2b | -0.027 |
| XLOC-003690 | 0.073 | barhl2 | -0.027 |
| sox3 | 0.073 | zfpm2a | -0.027 |
| cyp26b1 | 0.071 | syt1a | -0.026 |