| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.292 | sox3 | -0.217 |
| msgn1 | 0.284 | id1 | -0.190 |
| gata5 | 0.273 | sox19a | -0.151 |
| kirrel3l | 0.260 | cxcr4b | -0.146 |
| efnb2b | 0.258 | cited4b | -0.122 |
| dkk1b | 0.251 | zic2b | -0.114 |
| efnb2a | 0.247 | si:ch1073-80i24.3 | -0.110 |
| FP102169.1 | 0.246 | asb11 | -0.099 |
| gata6 | 0.243 | inka1a | -0.099 |
| mespab | 0.242 | foxd5 | -0.095 |
| efna1a | 0.241 | aldob | -0.094 |
| osr1 | 0.238 | sb:cb81 | -0.083 |
| ism1 | 0.233 | cxcr4a | -0.081 |
| pitx2 | 0.224 | foxh1 | -0.074 |
| dusp4 | 0.220 | shisa2a | -0.074 |
| cyp27c1 | 0.217 | mych | -0.073 |
| BX927327.1 | 0.213 | glulb | -0.070 |
| foxa | 0.213 | cdca7a | -0.070 |
| plekhn1 | 0.209 | sox2 | -0.065 |
| tbxta | 0.207 | gpd1b | -0.065 |
| sp5a | 0.203 | stk35l | -0.065 |
| aldh1a2 | 0.202 | mex3b | -0.064 |
| fgf8a | 0.201 | rgcc | -0.062 |
| fscn1a | 0.200 | nnr | -0.059 |
| lft2 | 0.200 | ckbb | -0.058 |
| trib3 | 0.199 | nanog | -0.058 |
| flrt3 | 0.199 | si:ch211-170d8.2 | -0.057 |
| rnd1b | 0.196 | si:ch211-152c2.3 | -0.057 |
| wu:fb97g03 | 0.195 | zgc:64022 | -0.055 |
| wnt11f2 | 0.194 | mycla | -0.054 |
| irx3a | 0.184 | serpine2 | -0.052 |
| aplnrb | 0.183 | ppp1r3b | -0.052 |
| zic2a | 0.183 | dnajb1b | -0.052 |
| ndr2 | 0.182 | si:dkey-56m19.5 | -0.051 |
| elovl6 | 0.180 | pkdccb | -0.051 |