| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| gfra3 | 0.400 | tuba8l2 | -0.082 |
| XLOC-019859 | 0.330 | hspb1 | -0.069 |
| foxl2b | 0.326 | tcf15 | -0.066 |
| stc2b | 0.295 | apoc1 | -0.062 |
| tcf21 | 0.290 | apoeb | -0.059 |
| XLOC-007078 | 0.273 | cdx4 | -0.057 |
| tbx1 | 0.258 | si:dkey-16p21.8 | -0.053 |
| hlx1 | 0.215 | eif4ebp3l | -0.051 |
| nkx3.3 | 0.211 | sp5l | -0.049 |
| foxl2a | 0.199 | hoxb7a | -0.048 |
| msc | 0.191 | si:ch211-152c2.3 | -0.048 |
| isl2a | 0.188 | hes6 | -0.048 |
| nkx2.3 | 0.182 | si:ch211-214j24.10 | -0.047 |
| pdgfc | 0.177 | gamt | -0.047 |
| isl2b | 0.166 | tbx16 | -0.047 |
| fgd4a | 0.165 | vox | -0.046 |
| phlda2 | 0.151 | efnb2b | -0.046 |
| tuba8l3 | 0.146 | tob1a | -0.046 |
| si:ch211-263k4.2 | 0.145 | polr3gla | -0.045 |
| lhx2b | 0.142 | cdx1a | -0.045 |
| dpysl2b | 0.138 | rbp7b | -0.045 |
| thsd7aa | 0.133 | msgn1 | -0.045 |
| nptx1l | 0.132 | atp1a2a | -0.044 |
| ptprz1b | 0.132 | znfl2a | -0.044 |
| rxfp3 | 0.131 | asph | -0.044 |
| ebf1a | 0.131 | angptl7 | -0.044 |
| nova2 | 0.130 | BX001014.2 | -0.043 |
| cyp19a1a | 0.128 | hoxc6b | -0.043 |
| notch3 | 0.128 | arid3c | -0.042 |
| LOC108192140 | 0.125 | serpinh1b | -0.041 |
| dlx4b | 0.125 | cx43.4 | -0.041 |
| ptmaa | 0.124 | BX927258.1 | -0.041 |
| tmem98 | 0.122 | lpar1 | -0.041 |
| nr5a2 | 0.119 | ppp1r3b | -0.041 |
| ankrd63 | 0.119 | hoxc3a | -0.040 |