| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.117 | si:ch73-265d7.2 | -0.080 |
| pitx2 | 0.113 | vim | -0.060 |
| nkx2.4a | 0.103 | slc1a3a | -0.054 |
| barhl2 | 0.088 | gfap | -0.053 |
| nkx2.4b | 0.077 | sp8b | -0.053 |
| emx2 | 0.077 | pax3a | -0.053 |
| sim2 | 0.071 | gas1b | -0.051 |
| wnt8b | 0.067 | endouc | -0.051 |
| CABZ01068367.1 | 0.064 | mdka | -0.050 |
| XLOC-020692 | 0.064 | hoxb3a | -0.050 |
| ptprn2 | 0.063 | col28a2a | -0.050 |
| barhl1b | 0.063 | col4a6 | -0.050 |
| epha7 | 0.061 | sb:cb81 | -0.049 |
| dmrta2 | 0.059 | col4a5 | -0.048 |
| tgfbr2b | 0.058 | meis1a | -0.048 |
| sypb | 0.057 | si:dkeyp-110a12.4 | -0.048 |
| XLOC-004652 | 0.057 | meis1b | -0.047 |
| si:ch211-161c3.6 | 0.056 | irx3b | -0.045 |
| shha | 0.056 | wnt11r | -0.043 |
| celf2 | 0.055 | her12 | -0.043 |
| dbx1a | 0.054 | hoxb1b | -0.042 |
| BX323573.1 | 0.054 | prss35 | -0.042 |
| sim2.1 | 0.054 | slc6a9 | -0.041 |
| prdx1 | 0.054 | gbx1 | -0.041 |
| calm1a | 0.053 | ptprfb | -0.041 |
| cotl1 | 0.053 | bicc2 | -0.041 |
| FP102309.1 | 0.052 | si:ch211-251b21.1 | -0.040 |
| atp1b2a | 0.052 | pkd1b | -0.039 |
| si:dkey-211g8.8 | 0.052 | ackr3b | -0.039 |
| pmp22b | 0.051 | msx1b | -0.039 |
| atp6v0a1b | 0.051 | tes | -0.039 |
| si:dkeyp-77h1.4 | 0.051 | daw1 | -0.039 |
| gpm6ab | 0.051 | col18a1a | -0.038 |
| LOC101887000 | 0.050 | hoxa2b | -0.038 |
| fabp1a | 0.050 | cdx4 | -0.038 |