| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| en1b | 0.212 | fgfr3 | -0.065 |
| en2a | 0.197 | gfap | -0.059 |
| pax2a | 0.196 | mdka | -0.055 |
| en2b | 0.193 | vim | -0.055 |
| pax8 | 0.176 | si:ch73-21g5.7 | -0.052 |
| pax2b | 0.161 | gas1b | -0.052 |
| cdh5 | 0.132 | cldn19 | -0.051 |
| XLOC-005615 | 0.132 | id1 | -0.048 |
| lhx1a | 0.118 | her4.2 | -0.048 |
| otpb | 0.117 | cd82a | -0.047 |
| cnpy1 | 0.112 | sparc | -0.047 |
| slc32a1 | 0.110 | meis1b | -0.046 |
| slc30a2 | 0.108 | col4a5 | -0.045 |
| lhx5 | 0.103 | si:ch73-265d7.2 | -0.044 |
| pdlim5a | 0.101 | her15.1 | -0.044 |
| klhl14 | 0.098 | col4a6 | -0.042 |
| zfhx3 | 0.098 | lfng | -0.042 |
| scrt1a | 0.097 | notch3 | -0.042 |
| slc6a5 | 0.096 | cldn5a | -0.041 |
| stap2a | 0.094 | tes | -0.041 |
| fgf8b | 0.094 | endouc | -0.040 |
| pdzrn4 | 0.091 | sox3 | -0.040 |
| slf1 | 0.090 | XLOC-003690 | -0.040 |
| cxxc4 | 0.090 | hmgb2a | -0.040 |
| cbfa2t3 | 0.090 | pleca | -0.040 |
| bhlhe22 | 0.088 | vamp3 | -0.040 |
| gbx2 | 0.086 | msna | -0.039 |
| zfhx4 | 0.083 | meis1a | -0.039 |
| celf4 | 0.081 | her4.1 | -0.038 |
| cntnap2b | 0.079 | slc1a3a | -0.038 |
| zc4h2 | 0.078 | XLOC-003689 | -0.037 |
| pou2f2a | 0.078 | boc | -0.037 |
| chn1 | 0.077 | rgcc | -0.037 |
| ube2ql1 | 0.077 | cd81a | -0.036 |
| nrxn1a | 0.076 | pax6a | -0.036 |