| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| otx2a | 0.264 | hoxb3a | -0.117 |
| BX649529.1 | 0.259 | meis2b | -0.111 |
| tal2 | 0.229 | meis1b | -0.109 |
| otx2b | 0.218 | tmsb4x | -0.104 |
| tal1 | 0.218 | ptmaa | -0.090 |
| shisa2a | 0.193 | fabp3 | -0.085 |
| emx2 | 0.170 | rpl37 | -0.084 |
| irx7 | 0.162 | meis2a | -0.079 |
| zfpm2b | 0.160 | nrn1a | -0.078 |
| sox14 | 0.156 | adcyap1b | -0.077 |
| cyp26a1 | 0.150 | tmsb | -0.076 |
| hesx1 | 0.143 | rps10 | -0.075 |
| aldob | 0.142 | gap43 | -0.073 |
| gata3 | 0.138 | zgc:114188 | -0.072 |
| stm | 0.138 | hoxd4a | -0.072 |
| her11 | 0.136 | hoxa3a | -0.071 |
| zic3 | 0.136 | hoxc4a | -0.070 |
| her5 | 0.131 | hoxd3a | -0.070 |
| hspb1 | 0.128 | slc17a6a | -0.070 |
| si:ch211-69b22.5 | 0.126 | mab21l1 | -0.068 |
| CR936482.1 | 0.125 | islr2 | -0.068 |
| zgc:101100 | 0.124 | nhlh2 | -0.067 |
| gata2a | 0.123 | rtn1a | -0.066 |
| pkdccb | 0.123 | nsg2 | -0.066 |
| zic2b | 0.121 | hoxb2a | -0.066 |
| si:ch211-152c2.3 | 0.119 | elavl3 | -0.066 |
| pprc1 | 0.117 | ebf1a | -0.066 |
| sfrp1a | 0.117 | gbx1 | -0.065 |
| nop58 | 0.116 | dscaml1 | -0.065 |
| fbl | 0.111 | cadm3 | -0.064 |
| sox2 | 0.111 | pbx3b | -0.064 |
| ncl | 0.111 | mab21l2 | -0.063 |
| dkc1 | 0.111 | tuba1c | -0.063 |
| nop2 | 0.110 | otpa | -0.061 |
| tdgf1 | 0.110 | rarga | -0.061 |