| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.301 | gpm6aa | -0.099 |
| zic2b | 0.256 | elavl3 | -0.079 |
| cdh6 | 0.236 | tmsb | -0.078 |
| msx2b | 0.235 | rtn1a | -0.074 |
| zic2a | 0.198 | gpm6ab | -0.074 |
| atoh1a | 0.197 | ckbb | -0.074 |
| zic5 | 0.190 | stmn1b | -0.066 |
| notum1a | 0.186 | nova2 | -0.062 |
| msx3 | 0.180 | tmsb4x | -0.062 |
| olig3 | 0.179 | myt1b | -0.061 |
| gdf10a | 0.174 | rnasekb | -0.059 |
| wnt10b | 0.163 | gapdhs | -0.059 |
| wnt11r | 0.150 | vim | -0.057 |
| BX248318.1 | 0.149 | cotl1 | -0.056 |
| fzd10 | 0.145 | acbd7 | -0.056 |
| lmx1a | 0.145 | fabp7a | -0.055 |
| atoh8 | 0.141 | gnao1a | -0.055 |
| cdon | 0.137 | si:ch73-386h18.1 | -0.054 |
| wls | 0.135 | si:dkey-276j7.1 | -0.054 |
| nradd | 0.134 | elavl4 | -0.054 |
| pax3a | 0.132 | pvalb1 | -0.054 |
| cdx4 | 0.129 | nova1 | -0.053 |
| adam8a | 0.128 | scrt2 | -0.053 |
| olig4 | 0.127 | gng3 | -0.052 |
| znfl1k | 0.123 | neurod4 | -0.052 |
| bmp5 | 0.120 | dpysl2b | -0.052 |
| wnt1 | 0.120 | ube2d4 | -0.052 |
| tpbga | 0.120 | hbae3 | -0.052 |
| si:dkey-261h17.1 | 0.117 | thsd7aa | -0.051 |
| apoc1 | 0.115 | gng2 | -0.051 |
| eve1 | 0.115 | si:dkeyp-75h12.5 | -0.051 |
| zic3 | 0.114 | nhlh2 | -0.051 |
| lamb1a | 0.114 | ywhah | -0.050 |
| hnf1ba | 0.113 | hbbe1.3 | -0.050 |
| wu:fb97g03 | 0.113 | jagn1a | -0.050 |