| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| gsc | 0.464 | rpl37 | -0.240 |
| lft2 | 0.459 | rps10 | -0.236 |
| shisa2a | 0.441 | zgc:114188 | -0.220 |
| her5 | 0.439 | rps17 | -0.202 |
| otx2a | 0.408 | nme2b.1 | -0.188 |
| noto | 0.388 | ahcy | -0.165 |
| otx1 | 0.374 | eno3 | -0.154 |
| chrd | 0.363 | gapdh | -0.152 |
| ndr2 | 0.350 | prdx2 | -0.150 |
| pkdcca | 0.339 | gamt | -0.147 |
| sfrp1a | 0.326 | atp5l | -0.147 |
| si:ch211-152c2.3 | 0.317 | mt-nd1 | -0.146 |
| her11 | 0.304 | suclg1 | -0.146 |
| dmbx1a | 0.299 | eef1da | -0.145 |
| akap12b | 0.297 | atp5if1b | -0.143 |
| sox32 | 0.295 | zgc:92744 | -0.143 |
| fzd8b | 0.293 | sod1 | -0.140 |
| zic2b | 0.291 | atp5mc3b | -0.137 |
| lft1 | 0.290 | mt-atp6 | -0.137 |
| marcksl1b | 0.288 | zgc:158463 | -0.134 |
| frzb | 0.288 | cox6a1 | -0.133 |
| fscn1a | 0.287 | gstp1 | -0.133 |
| cxcr4a | 0.286 | COX7A2 (1 of many) | -0.132 |
| elovl6 | 0.284 | nupr1b | -0.132 |
| insb | 0.278 | atp5pf | -0.130 |
| ednraa | 0.276 | fabp3 | -0.127 |
| nes | 0.274 | gatm | -0.127 |
| sb:cb81 | 0.271 | atp5f1b | -0.126 |
| stm | 0.271 | atp5pd | -0.126 |
| si:dkey-88l16.5 | 0.271 | zgc:56493 | -0.126 |
| asph | 0.268 | eef1b2 | -0.125 |
| tbx1 | 0.261 | fbp1b | -0.125 |
| si:ch73-160h15.3 | 0.261 | atp5mc1 | -0.123 |
| sox17 | 0.259 | gpx4a | -0.122 |
| foxa2 | 0.258 | apoa1b | -0.121 |