| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.216 | col9a3 | -0.064 |
| hoxb13a | 0.193 | col9a2 | -0.059 |
| hoxc13b | 0.181 | dlx5a | -0.059 |
| acta2 | 0.170 | col11a2 | -0.059 |
| aqp3a | 0.162 | col9a1a | -0.057 |
| LOC100535130 | 0.153 | mab21l2 | -0.056 |
| hoxc13a | 0.151 | cnmd | -0.053 |
| vwde | 0.144 | cpn1 | -0.052 |
| pitx2 | 0.143 | epyc | -0.051 |
| tnxbb | 0.142 | si:ch211-156j16.1 | -0.051 |
| and1 | 0.130 | otos | -0.051 |
| crabp2a | 0.130 | fgfbp2b | -0.050 |
| csrp2 | 0.127 | dlx4a | -0.050 |
| CABZ01074130.1 | 0.125 | dlx2a | -0.050 |
| eve1 | 0.123 | sox9a | -0.046 |
| fhl2a | 0.122 | dlx3b | -0.045 |
| si:ch211-43f4.1 | 0.119 | col2a1a | -0.045 |
| pitx1 | 0.117 | dlx4b | -0.043 |
| dmrt2a | 0.117 | dlx6a | -0.043 |
| pdlim3a | 0.116 | sox6 | -0.043 |
| pdgfrl | 0.114 | sox5 | -0.043 |
| crabp1b | 0.113 | cdh11 | -0.042 |
| lmod1b | 0.113 | dlx1a | -0.040 |
| myocd | 0.113 | si:ch211-222l21.1 | -0.040 |
| zgc:113307 | 0.111 | matn1 | -0.040 |
| nid1a | 0.111 | wwp2 | -0.039 |
| zmp:0000000846 | 0.110 | AL929222.2 | -0.038 |
| fgl1 | 0.108 | hapln1a | -0.038 |
| tpbga | 0.106 | tnc | -0.038 |
| mxra5b | 0.106 | ucmab | -0.038 |
| atp1b1a | 0.106 | col11a1a | -0.038 |
| postnb | 0.103 | tnxba | -0.037 |
| kazald3 | 0.103 | foxd1 | -0.037 |
| meox1 | 0.103 | si:dkey-6n6.1 | -0.036 |
| shhb | 0.100 | barx1 | -0.036 |