| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.208 | NC-002333.4 | -0.222 |
| ccna1 | 0.199 | ptmab | -0.130 |
| cldnd | 0.199 | tbxta | -0.130 |
| h2af1al | 0.189 | hmgb2a | -0.123 |
| h1m | 0.188 | hspb1 | -0.122 |
| gtf2a1 | 0.182 | hmgn6 | -0.118 |
| inka1a | 0.182 | hmgn2 | -0.115 |
| zgc:100951 | 0.179 | cdx4 | -0.115 |
| thy1 | 0.178 | apoc1 | -0.113 |
| ccnb2 | 0.176 | si:ch73-1a9.3 | -0.111 |
| mkrn4 | 0.172 | wu:fb97g03 | -0.111 |
| si:ch211-132b12.8 | 0.171 | wnt11f2 | -0.108 |
| cdca7a | 0.171 | hnrnpa0b | -0.107 |
| ctss2.1 | 0.170 | mt-co1 | -0.099 |
| acp5a | 0.169 | si:ch211-222l21.1 | -0.097 |
| wee2 | 0.169 | marcksl1b | -0.096 |
| blf | 0.163 | BX927258.1 | -0.096 |
| zgc:113424 | 0.161 | efnb2b | -0.095 |
| gdf3 | 0.161 | im:7138239 | -0.093 |
| aktip | 0.161 | wnt5b | -0.091 |
| dnajc1 | 0.159 | mt-co2 | -0.091 |
| zgc:77118 | 0.158 | hmga1a | -0.089 |
| npc2 | 0.158 | msgn1 | -0.088 |
| spink2.1 | 0.158 | ybx1 | -0.087 |
| tent5c | 0.157 | mespab | -0.085 |
| LOC101885477 | 0.157 | eve1 | -0.084 |
| lamp2 | 0.157 | si:dkeyp-2e4.3 | -0.083 |
| pabpn1l | 0.155 | aldh1a2 | -0.080 |
| ccna2 | 0.154 | p4ha2 | -0.080 |
| si:dkey-42i9.4 | 0.154 | ism1 | -0.079 |
| tipin | 0.153 | flrt3 | -0.078 |
| glulb | 0.152 | crabp2b | -0.077 |
| siva1 | 0.152 | tpbga | -0.077 |
| gle1 | 0.151 | lhx1a | -0.077 |
| ivns1abpb | 0.150 | pitx2 | -0.076 |