| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| cited4b | 0.217 | NC-002333.4 | -0.160 |
| blf | 0.213 | efnb2b | -0.155 |
| nanog | 0.206 | lhx1a | -0.154 |
| glulb | 0.195 | msgn1 | -0.148 |
| si:ch211-173m16.2 | 0.194 | gata6 | -0.144 |
| stk35l | 0.188 | mespab | -0.141 |
| ctsla | 0.180 | gata5 | -0.137 |
| ddx5 | 0.177 | ism1 | -0.136 |
| asb11 | 0.174 | tbxta | -0.133 |
| cdca7a | 0.174 | sp5a | -0.130 |
| ccna2 | 0.169 | kirrel3l | -0.126 |
| si:dkey-68o6.5 | 0.167 | wu:fb97g03 | -0.125 |
| ccnd1 | 0.166 | dkk1b | -0.124 |
| cxcr4b | 0.165 | BX927327.1 | -0.117 |
| inka1a | 0.163 | foxa | -0.114 |
| vgll4l | 0.161 | pitx2 | -0.114 |
| hmgb1a | 0.160 | efna1a | -0.114 |
| gtf2a1 | 0.159 | FP102169.1 | -0.114 |
| hnrnpabb | 0.158 | efnb2a | -0.112 |
| sox3 | 0.157 | mespaa | -0.109 |
| zic2b | 0.155 | im:7138239 | -0.106 |
| ubc | 0.151 | wnt11f2 | -0.106 |
| zgc:56676 | 0.149 | si:dkey-108k21.10 | -0.105 |
| cxcr4a | 0.148 | osr1 | -0.103 |
| cnot8 | 0.145 | p4ha2 | -0.103 |
| si:ch73-299h12.3 | 0.145 | zswim5 | -0.102 |
| rbm7 | 0.143 | aplnrb | -0.101 |
| mkrn4 | 0.142 | aldh1a2 | -0.099 |
| si:ch1073-80i24.3 | 0.140 | flrt3 | -0.098 |
| mych | 0.139 | dusp4 | -0.098 |
| AL935174.5 | 0.138 | cdx4 | -0.098 |
| pttg1 | 0.136 | sox32 | -0.097 |
| ctbp1 | 0.136 | rpl11 | -0.095 |
| tmed2 | 0.135 | sebox | -0.095 |
| si:dkey-42i9.4 | 0.134 | wnt5b | -0.094 |