| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis3 | 0.268 | col9a1a | -0.146 |
| meis1b | 0.266 | cthrc1a | -0.146 |
| crabp1b | 0.266 | col2a1a | -0.141 |
| lbx2 | 0.251 | col9a2 | -0.141 |
| pbx1b | 0.245 | col9a3 | -0.138 |
| pbx1a | 0.224 | matn4 | -0.134 |
| hoxb3a | 0.202 | col2a1b | -0.133 |
| sostdc1a | 0.201 | tgfbi | -0.125 |
| hoxb5a | 0.190 | cnmd | -0.124 |
| tcf21 | 0.177 | fgfbp2b | -0.123 |
| aldh1a2 | 0.176 | col11a1a | -0.123 |
| hoxb5b | 0.173 | sox9a | -0.120 |
| meis1a | 0.170 | tnn | -0.117 |
| zgc:153704 | 0.168 | col11a2 | -0.115 |
| hoxc3a | 0.165 | fxyd1 | -0.106 |
| rbp5 | 0.164 | fibina | -0.103 |
| jun | 0.162 | fmoda | -0.098 |
| gsc | 0.161 | epyc | -0.095 |
| cxcl12a | 0.153 | VIT | -0.095 |
| ccl25b | 0.153 | sox5 | -0.093 |
| hoxc1a | 0.148 | ucmab | -0.091 |
| si:ch73-335l21.4 | 0.148 | ecrg4a | -0.089 |
| tmeff2a | 0.146 | thbs1b | -0.088 |
| osr1 | 0.145 | dlx5a | -0.087 |
| efna2a | 0.142 | dlx3b | -0.087 |
| sfrp2 | 0.142 | col11a1b | -0.085 |
| tmem88b | 0.142 | tnc | -0.084 |
| marcksl1a | 0.141 | col8a2 | -0.083 |
| bmp16 | 0.140 | cdo1 | -0.083 |
| hoxb6a | 0.140 | msx1b | -0.082 |
| hoxb1b | 0.140 | matn1 | -0.081 |
| meis2a | 0.139 | pcbd1 | -0.081 |
| hoxb8a | 0.138 | foxc1b | -0.079 |
| foxf1 | 0.136 | dlx4a | -0.079 |
| znf703 | 0.135 | phlda3 | -0.078 |