| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.556 | id1 | -0.227 |
| pax2a | 0.379 | XLOC-003690 | -0.223 |
| slc32a1 | 0.376 | cldn5a | -0.200 |
| stxbp1a | 0.345 | msna | -0.196 |
| hmx3a | 0.338 | mdka | -0.193 |
| slc6a5 | 0.335 | hmgb2a | -0.191 |
| stx1b | 0.330 | sox3 | -0.189 |
| slc30a2 | 0.326 | notch3 | -0.181 |
| pax8 | 0.325 | her15.1 | -0.178 |
| scrt1a | 0.322 | vamp3 | -0.175 |
| rbfox3a | 0.322 | sparc | -0.173 |
| nsg2 | 0.320 | XLOC-003689 | -0.172 |
| nrxn1a | 0.316 | sdc4 | -0.170 |
| zfhx3 | 0.316 | fosab | -0.160 |
| vamp2 | 0.292 | si:ch73-265d7.2 | -0.157 |
| myt1b | 0.290 | COX7A2 (1 of many) | -0.156 |
| pax2b | 0.290 | btg2 | -0.156 |
| atcaya | 0.290 | sb:cb81 | -0.155 |
| cplx2 | 0.288 | msi1 | -0.155 |
| cbfa2t3 | 0.280 | zgc:56493 | -0.153 |
| nkx1.2lb | 0.280 | gfap | -0.150 |
| hoxb9a | 0.279 | her4.1 | -0.149 |
| sncb | 0.276 | tuba8l4 | -0.148 |
| zfhx4 | 0.276 | her12 | -0.147 |
| jagn1a | 0.276 | ccng1 | -0.146 |
| gng2 | 0.274 | fabp7a | -0.146 |
| csdc2a | 0.273 | si:ch211-286b5.5 | -0.146 |
| pou2f2a | 0.273 | gas1b | -0.143 |
| sncgb | 0.273 | atp1a1b | -0.143 |
| ube2ql1 | 0.270 | cd63 | -0.142 |
| ywhah | 0.268 | XLOC-003692 | -0.142 |
| zc4h2 | 0.267 | her4.2 | -0.142 |
| stap2a | 0.267 | cd82a | -0.141 |
| elavl3 | 0.266 | actb2 | -0.141 |
| atp6v0cb | 0.266 | sox19a | -0.140 |