| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| her3 | 0.270 | tbx16 | -0.198 |
| pkdccb | 0.231 | h1m | -0.162 |
| alcamb | 0.188 | mkrn4 | -0.152 |
| si:ch211-152c2.3 | 0.186 | si:dkey-261j4.5 | -0.150 |
| sox2 | 0.186 | ddit4 | -0.147 |
| hmgb2a | 0.180 | zgc:56676 | -0.142 |
| midn | 0.178 | blf | -0.140 |
| prdm14 | 0.176 | nanog | -0.139 |
| si:ch211-222l21.1 | 0.174 | spink2.1 | -0.139 |
| eef1a1l1 | 0.172 | gtf2a1 | -0.138 |
| otx2a | 0.169 | zgc:173742 | -0.138 |
| sfrp1a | 0.167 | ccna1 | -0.135 |
| aldob | 0.165 | dnajc1 | -0.134 |
| add3b | 0.158 | npc2 | -0.131 |
| si:ch73-1a9.3 | 0.156 | acp5a | -0.131 |
| hmga1a | 0.155 | tbxta | -0.129 |
| hesx1 | 0.154 | lamp2 | -0.126 |
| sox19a | 0.154 | cldnd | -0.126 |
| ptmab | 0.154 | si:dkey-68o6.5 | -0.125 |
| hnrnpa0b | 0.152 | cth1 | -0.124 |
| pfkfb4b | 0.151 | rbm7 | -0.123 |
| hspb1 | 0.150 | rcor1 | -0.119 |
| hmgn2 | 0.146 | h2af1al | -0.118 |
| lfng | 0.143 | ved | -0.116 |
| irx1b | 0.137 | eve1 | -0.116 |
| h2afvb | 0.136 | gdf3 | -0.114 |
| sox3 | 0.133 | wnt11f2 | -0.110 |
| npm1a | 0.132 | tob1a | -0.108 |
| anp32a | 0.132 | psme3 | -0.108 |
| dynll1 | 0.132 | snai1a | -0.107 |
| hnrnpa1b | 0.131 | dctpp1 | -0.107 |
| polr3gla | 0.129 | gpatch4 | -0.105 |
| crabp2b | 0.129 | ppp4r2a | -0.104 |
| anp32b | 0.127 | syncripl | -0.103 |
| si:ch73-141c7.1 | 0.127 | zgc:77118 | -0.102 |