| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| hmx3a | 0.636 | XLOC-003690 | -0.137 |
| lhx1a | 0.289 | id1 | -0.130 |
| pou4f1 | 0.269 | her15.1 | -0.128 |
| tfap2a | 0.261 | mdka | -0.119 |
| foxd3 | 0.256 | cldn5a | -0.115 |
| lhx5 | 0.250 | hmgb2a | -0.113 |
| rbfox3a | 0.239 | XLOC-003689 | -0.111 |
| pou4f2 | 0.229 | sox3 | -0.111 |
| stxbp1a | 0.227 | msna | -0.108 |
| nrxn1a | 0.220 | notch3 | -0.105 |
| snap25a | 0.216 | sdc4 | -0.100 |
| stx1b | 0.214 | vamp3 | -0.099 |
| sncb | 0.214 | btg2 | -0.098 |
| sncgb | 0.214 | zgc:56493 | -0.097 |
| celf5a | 0.209 | COX7A2 (1 of many) | -0.097 |
| gng3 | 0.197 | msi1 | -0.097 |
| ywhag2 | 0.194 | sparc | -0.097 |
| nrn1a | 0.191 | XLOC-003692 | -0.095 |
| XLOC-028064 | 0.187 | tspan7 | -0.094 |
| stmn2a | 0.187 | her4.2 | -0.093 |
| vamp2 | 0.187 | si:dkey-151g10.6 | -0.091 |
| elavl4 | 0.184 | rplp1 | -0.091 |
| tmsb2 | 0.182 | sox19a | -0.090 |
| csdc2a | 0.182 | her4.1 | -0.090 |
| zgc:65894 | 0.179 | sb:cb81 | -0.088 |
| cplx2 | 0.178 | gpm6bb | -0.086 |
| zfhx3 | 0.178 | her12 | -0.086 |
| atp6v0cb | 0.177 | si:ch211-286b5.5 | -0.086 |
| rtn1b | 0.176 | cd82a | -0.085 |
| olfm1b | 0.175 | lfng | -0.084 |
| cplx2l | 0.175 | fabp7a | -0.084 |
| pou2f2a | 0.174 | fosab | -0.083 |
| syt2a | 0.174 | ccng1 | -0.083 |
| robo2 | 0.174 | gfap | -0.083 |
| cdk5r1b | 0.173 | tuba8l | -0.082 |