| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.456 | sox3 | -0.366 |
| tbxta | 0.449 | id1 | -0.239 |
| wnt11f2 | 0.434 | sox19a | -0.225 |
| osr1 | 0.411 | cxcr4b | -0.224 |
| FP102169.1 | 0.409 | cited4b | -0.194 |
| mespab | 0.405 | crabp2b | -0.171 |
| gata5 | 0.402 | gata2a | -0.151 |
| dkk1b | 0.398 | zic2b | -0.150 |
| msgn1 | 0.397 | kazald2 | -0.147 |
| foxa | 0.390 | si:ch1073-80i24.3 | -0.145 |
| efnb2b | 0.377 | pkdccb | -0.137 |
| ndr2 | 0.370 | pfkfb4b | -0.134 |
| gata6 | 0.369 | si:ch211-170d8.2 | -0.132 |
| zic2a | 0.365 | asb11 | -0.128 |
| fgf8a | 0.361 | shisa2a | -0.128 |
| pitx2 | 0.361 | sox2 | -0.124 |
| ism1 | 0.359 | gpd1b | -0.122 |
| cyp27c1 | 0.357 | sfrp1a | -0.121 |
| sebox | 0.355 | foxh1 | -0.117 |
| sp5a | 0.354 | inka1a | -0.113 |
| wu:fb97g03 | 0.353 | LOC108190024 | -0.113 |
| BX927327.1 | 0.350 | tfap2a | -0.112 |
| dusp4 | 0.342 | foxd5 | -0.112 |
| aplnrb | 0.328 | klf2b | -0.109 |
| lft1 | 0.320 | hirip3 | -0.108 |
| aldh1a2 | 0.320 | zgc:64022 | -0.105 |
| kirrel3l | 0.319 | rgcc | -0.104 |
| efnb2a | 0.318 | foxi1 | -0.104 |
| trib3 | 0.318 | tfap2c | -0.104 |
| notum1a | 0.310 | sb:cb81 | -0.104 |
| tbx16 | 0.307 | sult6b1 | -0.102 |
| mespaa | 0.307 | tsc22d2 | -0.102 |
| lft2 | 0.306 | lfng | -0.101 |
| flrt3 | 0.303 | tubb4b | -0.097 |
| snai1a | 0.301 | hmgb2a | -0.096 |