| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| foxf2a | 0.423 | cdon | -0.104 |
| ptch2 | 0.266 | ca6 | -0.091 |
| foxq1a | 0.248 | gas1a | -0.082 |
| foxf2b | 0.244 | si:ch211-251b21.1 | -0.079 |
| foxl1 | 0.230 | cthrc1a | -0.075 |
| barx1 | 0.221 | akap12b | -0.074 |
| hhip | 0.197 | fxyd1 | -0.072 |
| LOC108180013 | 0.194 | ccl25b | -0.072 |
| foxq1b | 0.173 | boc | -0.071 |
| pbx1b | 0.171 | bhmt | -0.071 |
| tcf21 | 0.161 | zfhx3 | -0.069 |
| hoxb3a | 0.160 | lmx1bb | -0.065 |
| efna2a | 0.157 | VIT | -0.065 |
| ociad2 | 0.150 | msx1b | -0.063 |
| twist2 | 0.144 | zfhx4 | -0.062 |
| meox2b | 0.142 | alcama | -0.062 |
| isl2a | 0.141 | crabp2a | -0.062 |
| hoxb5a | 0.140 | tpbga | -0.061 |
| hoxd4a | 0.137 | kitlga | -0.061 |
| meis2b | 0.136 | otos | -0.061 |
| lhx6 | 0.135 | csf1a | -0.060 |
| gsc | 0.132 | col9a1a | -0.059 |
| flot1b | 0.130 | fmoda | -0.059 |
| satb2 | 0.129 | zic3 | -0.059 |
| hoxb6a | 0.124 | col11a1a | -0.059 |
| ccdc3b | 0.122 | pitx2 | -0.058 |
| hsd11b2 | 0.121 | zic1 | -0.058 |
| si:dkeyp-66d1.7 | 0.121 | mxra5b | -0.058 |
| ptch1 | 0.118 | rhag | -0.057 |
| efnb2b | 0.117 | rbp4 | -0.057 |
| col6a4a | 0.114 | csf1b | -0.057 |
| cyyr1 | 0.114 | cnmd | -0.057 |
| si:ch211-106h4.12 | 0.112 | calm1a | -0.056 |
| scube2 | 0.111 | mdka | -0.056 |
| twist1b | 0.109 | col12a1a | -0.056 |