| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nkx2.4a | 0.208 | meis1b | -0.054 |
| foxd1 | 0.199 | mab21l1 | -0.048 |
| nkx2.4b | 0.198 | mab21l2 | -0.043 |
| prdx1 | 0.172 | hoxb3a | -0.041 |
| gnrh2 | 0.154 | irx1a | -0.041 |
| nr4a2b | 0.141 | en2b | -0.041 |
| foxa2 | 0.136 | pax3a | -0.039 |
| fgfrl1a | 0.135 | irx5a | -0.038 |
| tac1 | 0.127 | meis2b | -0.038 |
| fezf2 | 0.125 | meis2a | -0.038 |
| nkx2.1 | 0.124 | rbfox1 | -0.036 |
| si:dkey-208c12.2 | 0.120 | irx3a | -0.035 |
| fzd5 | 0.113 | irx3b | -0.035 |
| slc1a3b | 0.107 | lhx9 | -0.035 |
| bsx | 0.098 | si:ch73-386h18.1 | -0.034 |
| sox1b | 0.097 | marcksl1b | -0.033 |
| isl1l | 0.095 | pax7a | -0.032 |
| rx3 | 0.094 | rbfox3a | -0.032 |
| scube1 | 0.087 | plxna4 | -0.032 |
| ptx3a | 0.086 | rarga | -0.032 |
| sema3c | 0.086 | msx1b | -0.030 |
| id3 | 0.083 | bcl11ba | -0.030 |
| LOC108191313 | 0.082 | tfap2a | -0.030 |
| lix1 | 0.079 | apoeb | -0.030 |
| uts1 | 0.076 | gas1b | -0.030 |
| kcnk13b | 0.075 | irx1b | -0.029 |
| zgc:174888 | 0.074 | raraa | -0.029 |
| ndnfl | 0.074 | sp8b | -0.029 |
| zfp36l2 | 0.071 | sb:cb81 | -0.029 |
| nr2e1 | 0.071 | pax7b | -0.029 |
| wnt7bb | 0.070 | gpm6ab | -0.029 |
| rnd3a | 0.069 | syt2a | -0.028 |
| hmga2 | 0.068 | si:ch211-152c2.3 | -0.028 |
| ntn1b | 0.067 | gata2a | -0.028 |
| vegfaa | 0.066 | CR848047.1 | -0.028 |