| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.350 | sox3 | -0.268 |
| fgf8a | 0.337 | id1 | -0.231 |
| dkk1b | 0.326 | sox19a | -0.185 |
| gata5 | 0.321 | cxcr4b | -0.170 |
| osr1 | 0.321 | aldob | -0.167 |
| pitx2 | 0.311 | zic2b | -0.155 |
| gata6 | 0.306 | asb11 | -0.153 |
| lft1 | 0.301 | si:ch1073-80i24.3 | -0.132 |
| foxa | 0.299 | foxd5 | -0.126 |
| mespab | 0.287 | si:ch211-152c2.3 | -0.116 |
| ism1 | 0.279 | sb:cb81 | -0.112 |
| FP102169.1 | 0.268 | polr3gla | -0.111 |
| dusp4 | 0.267 | si:ch211-222l21.1 | -0.110 |
| lft2 | 0.266 | anp32b | -0.108 |
| wnt11f2 | 0.266 | sox2 | -0.106 |
| trib3 | 0.266 | hmgb2a | -0.105 |
| efnb2b | 0.264 | atp1b1a | -0.099 |
| fgf3 | 0.260 | gpd1b | -0.097 |
| ndr2 | 0.256 | add3b | -0.096 |
| fscn1a | 0.254 | inka1a | -0.094 |
| msgn1 | 0.254 | si:ch73-1a9.3 | -0.094 |
| cyp27c1 | 0.253 | mych | -0.092 |
| kirrel3l | 0.253 | cxcr4a | -0.092 |
| efna1a | 0.251 | pfkfb4b | -0.087 |
| irx3a | 0.248 | nnr | -0.086 |
| foxa3 | 0.244 | LOC108190024 | -0.085 |
| efnb2a | 0.244 | crabp2b | -0.084 |
| aplnra | 0.243 | si:dkey-56m19.5 | -0.083 |
| zic2a | 0.238 | hspe1 | -0.078 |
| ndr1 | 0.238 | anp32a | -0.077 |
| aplnrb | 0.236 | alcamb | -0.077 |
| tbxta | 0.233 | foxh1 | -0.076 |
| sebox | 0.230 | si:ch211-170d8.2 | -0.074 |
| elovl6 | 0.228 | pkdccb | -0.072 |
| foxc1a | 0.224 | anp32e | -0.071 |