| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.078 | NC-002333.4 | -0.102 |
| cldnd | 0.077 | stm | -0.054 |
| npc2 | 0.072 | hmgb2a | -0.048 |
| atp5fa1 | 0.071 | zgc:110425 | -0.043 |
| si:dkey-42i9.4 | 0.071 | akap12b | -0.043 |
| tent5c | 0.070 | si:ch73-1a9.3 | -0.041 |
| ccnb1 | 0.070 | hspb1 | -0.035 |
| ccna1 | 0.069 | msgn1 | -0.035 |
| prrg2 | 0.069 | marcksl1b | -0.034 |
| zgc:55262 | 0.068 | galnt7 | -0.032 |
| aktip | 0.068 | zfp36l1b | -0.031 |
| si:ch211-132b12.8 | 0.067 | si:ch73-138e16.3 | -0.031 |
| acp5a | 0.067 | ptmab | -0.031 |
| st14a | 0.067 | nucks1a | -0.031 |
| ccna2 | 0.065 | NC-002333.9 | -0.031 |
| BX005461.1 | 0.064 | flj11011l | -0.030 |
| gdf3 | 0.064 | si:dkeyp-2e4.3 | -0.030 |
| mtfr2 | 0.064 | rtn1b | -0.029 |
| uchl1 | 0.064 | tmem198a | -0.029 |
| zgc:103482 | 0.063 | ncl | -0.029 |
| stk38l | 0.063 | crabp2b | -0.028 |
| ckbb | 0.062 | wnt5b | -0.028 |
| atl3 | 0.062 | fam136a | -0.028 |
| zgc:77118 | 0.062 | sp5l | -0.028 |
| gapdh | 0.062 | efnb2b | -0.028 |
| cbx8b | 0.061 | hes6 | -0.027 |
| cpvl | 0.061 | cd82a | -0.027 |
| mknk2a | 0.061 | tuba8l3 | -0.027 |
| thy1 | 0.061 | si:dkey-108k21.10 | -0.027 |
| her5 | 0.061 | myoz1b | -0.027 |
| mbtd1 | 0.060 | dnah2 | -0.027 |
| mibp2 | 0.060 | ppp1r15a | -0.026 |
| CABZ01026681.1 | 0.060 | rplp1 | -0.026 |
| LOC101885477 | 0.060 | LOC100331003 | -0.026 |
| chmp4c | 0.060 | BX511079.1 | -0.026 |