| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.195 | nr6a1a | -0.159 |
| matn4 | 0.195 | zgc:174153 | -0.156 |
| snorc | 0.193 | si:dkey-239j18.2 | -0.145 |
| zgc:173742 | 0.179 | ctslb | -0.138 |
| si:ch1073-80i24.3 | 0.179 | sec61g | -0.134 |
| LOC101885485 | 0.179 | calr3b | -0.133 |
| ccna1 | 0.173 | si:dkey-269i1.4 | -0.130 |
| h1m | 0.170 | timp4.1 | -0.126 |
| h2af1al | 0.170 | frzb | -0.122 |
| zgc:100951 | 0.169 | klf17 | -0.122 |
| si:dkey-68o6.5 | 0.167 | prdm1a | -0.119 |
| uacab | 0.167 | plpp1a | -0.119 |
| cldnd | 0.166 | rps12 | -0.118 |
| tgfbi | 0.165 | b3gnt5b | -0.112 |
| acp5a | 0.164 | tuba8l2 | -0.111 |
| fxyd6l | 0.164 | six3b | -0.110 |
| sdc2 | 0.162 | rdh8a | -0.109 |
| rcc1 | 0.161 | fzd8b | -0.108 |
| aplp2 | 0.160 | rpl27 | -0.106 |
| gdf3 | 0.158 | he1.2 | -0.106 |
| cxcr4b | 0.158 | ephb3a | -0.103 |
| gtf2a1 | 0.157 | rplp1 | -0.102 |
| cdca7a | 0.157 | pitx2 | -0.101 |
| atp1b3b | 0.154 | xkr9 | -0.100 |
| nnr | 0.154 | si:dkey-239j18.3 | -0.100 |
| npc2 | 0.153 | rpl7a | -0.099 |
| mkrn4 | 0.153 | mllt1b | -0.099 |
| fam169ab | 0.152 | rpl35a | -0.099 |
| acsf2 | 0.152 | ssr3 | -0.098 |
| si:dkeyp-114g9.1 | 0.151 | si:dkey-26g8.5 | -0.097 |
| rbpms2b | 0.151 | insb | -0.097 |
| map1lc3c | 0.150 | bhlha15 | -0.097 |
| blf | 0.150 | rps4x | -0.097 |
| LO018188.1 | 0.149 | isl1 | -0.097 |
| BX323880.1 | 0.149 | inhbaa | -0.096 |