| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.450 | sox3 | -0.369 |
| mespab | 0.422 | cxcr4b | -0.257 |
| tbxta | 0.421 | sox19a | -0.244 |
| osr1 | 0.417 | id1 | -0.244 |
| dkk1b | 0.411 | cited4b | -0.202 |
| wnt11f2 | 0.410 | asb11 | -0.184 |
| msgn1 | 0.406 | zic2b | -0.180 |
| FP102169.1 | 0.392 | inka1a | -0.172 |
| BX927327.1 | 0.386 | foxd5 | -0.161 |
| gata5 | 0.386 | cxcr4a | -0.160 |
| aplnrb | 0.378 | si:ch1073-80i24.3 | -0.155 |
| fgf8a | 0.373 | shisa2a | -0.147 |
| efnb2b | 0.371 | foxh1 | -0.129 |
| ndr2 | 0.366 | sb:cb81 | -0.128 |
| pitx2 | 0.360 | gpd1b | -0.124 |
| fscn1a | 0.357 | pfkfb4b | -0.122 |
| zic2a | 0.356 | aldob | -0.121 |
| aldh1a2 | 0.355 | si:ch211-170d8.2 | -0.114 |
| sp5a | 0.355 | glulb | -0.107 |
| foxa | 0.351 | sox2 | -0.107 |
| ism1 | 0.351 | mych | -0.100 |
| gata6 | 0.351 | alcamb | -0.099 |
| sebox | 0.348 | kazald2 | -0.097 |
| wu:fb97g03 | 0.333 | LOC101885477 | -0.096 |
| efnb2a | 0.327 | zgc:64022 | -0.095 |
| kirrel3l | 0.326 | lfng | -0.094 |
| dusp4 | 0.322 | nasp | -0.094 |
| lft1 | 0.320 | cdca7a | -0.093 |
| trib3 | 0.308 | mex3b | -0.092 |
| mespaa | 0.297 | si:ch211-173m16.2 | -0.091 |
| flrt3 | 0.291 | snai2 | -0.091 |
| fgf3 | 0.287 | dnajb1b | -0.090 |
| efna1a | 0.285 | her3 | -0.090 |
| zswim5 | 0.283 | pkdccb | -0.089 |
| notum1a | 0.275 | crabp2b | -0.088 |