| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| meis3 | 0.159 | col9a1a | -0.070 |
| dhrs3b | 0.155 | col2a1a | -0.068 |
| hoxb1b | 0.151 | col9a2 | -0.068 |
| hoxb5b | 0.134 | cnmd | -0.065 |
| hoxc1a | 0.131 | ecrg4a | -0.062 |
| dhrs3a | 0.127 | col9a3 | -0.062 |
| meis2b | 0.124 | fgfbp2b | -0.061 |
| CABZ01075068.1 | 0.118 | foxc1b | -0.052 |
| hoxb3a | 0.113 | sox9a | -0.047 |
| cyp27c1 | 0.113 | six2a | -0.046 |
| meis1a | 0.108 | hapln1a | -0.045 |
| hoxb5a | 0.108 | col11a2 | -0.044 |
| rbp5 | 0.099 | sod1 | -0.044 |
| apela | 0.093 | dlx4a | -0.043 |
| shisa2a | 0.091 | fxyd1 | -0.043 |
| nkx3-1 | 0.089 | VIT | -0.043 |
| pbx1b | 0.083 | otos | -0.042 |
| meis1b | 0.083 | epyc | -0.042 |
| hoxb8a | 0.083 | fibina | -0.041 |
| hoxb6a | 0.081 | hpgd | -0.041 |
| hoxa3a | 0.081 | barx1 | -0.041 |
| pbx1a | 0.080 | LO018188.1 | -0.040 |
| LOC103911332 | 0.079 | rplp2 | -0.040 |
| lbx2 | 0.079 | spon2b | -0.040 |
| hoxc3a | 0.075 | col2a1b | -0.039 |
| crabp1b | 0.074 | col8a2 | -0.039 |
| rxrga | 0.073 | dlx1a | -0.039 |
| znf503 | 0.073 | col11a1a | -0.038 |
| dkk1b | 0.070 | ucmab | -0.038 |
| zfp36l1a | 0.069 | tbx15 | -0.038 |
| fabp3 | 0.067 | matn1 | -0.038 |
| zgc:56699 | 0.067 | dlx5a | -0.037 |
| raraa | 0.066 | si:ch211-156j16.1 | -0.037 |
| prdm1a | 0.065 | si:dkey-19b23.8 | -0.037 |
| hoxb2a | 0.065 | CYTL1 | -0.036 |