| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| spon1b | 0.329 | gpm6ab | -0.098 |
| shha | 0.299 | stmn1b | -0.089 |
| ntn1b | 0.284 | si:dkey-276j7.1 | -0.087 |
| shhb | 0.256 | ptmaa | -0.087 |
| slit2 | 0.255 | hoxb8a | -0.086 |
| vasna | 0.247 | elavl4 | -0.081 |
| sparcl1 | 0.245 | stx1b | -0.080 |
| arxa | 0.238 | rtn1a | -0.080 |
| sulf1 | 0.220 | gng3 | -0.079 |
| si:dkey-208c12.2 | 0.217 | stxbp1a | -0.078 |
| foxa2 | 0.212 | elavl3 | -0.077 |
| apoc1 | 0.206 | sncb | -0.076 |
| foxa1 | 0.203 | snap25a | -0.076 |
| sema3bl | 0.200 | myt1b | -0.074 |
| foxa | 0.200 | cplx2 | -0.074 |
| slit1b | 0.199 | vamp2 | -0.073 |
| clu | 0.199 | hoxb9a | -0.073 |
| si:dkey-40c11.2 | 0.177 | rtn1b | -0.071 |
| metrnla | 0.176 | cadm3 | -0.069 |
| lmx1bb | 0.173 | ckbb | -0.069 |
| lmx1ba | 0.168 | nova1 | -0.069 |
| cpm | 0.164 | csdc2a | -0.068 |
| dnase1l4.1 | 0.161 | syt2a | -0.068 |
| her9 | 0.161 | calm2b | -0.068 |
| myl9a | 0.160 | stmn2a | -0.068 |
| tmem88b | 0.159 | tmeff1b | -0.068 |
| ntn1a | 0.153 | gng2 | -0.068 |
| loxl5b | 0.153 | meis1b | -0.067 |
| bicc2 | 0.152 | zgc:65894 | -0.067 |
| npr3 | 0.151 | si:ch211-251b21.1 | -0.067 |
| sp5l | 0.148 | jagn1a | -0.066 |
| olfml2ba | 0.145 | vim | -0.066 |
| wnt11r | 0.145 | rnasekb | -0.066 |
| eve1 | 0.144 | map1aa | -0.066 |
| ctgfa | 0.144 | hoxb3a | -0.065 |