| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.232 | fgfbp2b | -0.079 |
| fmoda | 0.226 | barx1 | -0.076 |
| csf1a | 0.207 | si:ch211-156j16.1 | -0.072 |
| hhla2a.1 | 0.194 | foxf2a | -0.070 |
| cdon | 0.190 | foxc1b | -0.069 |
| tpbga | 0.173 | ecrg4a | -0.066 |
| msx3 | 0.168 | hpgd | -0.066 |
| dmrt2a | 0.163 | dlx5a | -0.063 |
| alcama | 0.159 | hand2 | -0.062 |
| zfhx3 | 0.158 | dlx2a | -0.059 |
| ccdc80l2 | 0.158 | foxf1 | -0.057 |
| tgm2b | 0.156 | matn1 | -0.055 |
| vcam1b | 0.155 | gsc | -0.055 |
| tnn | 0.153 | nkx3.2 | -0.055 |
| ism1 | 0.148 | si:dkey-261h17.1 | -0.055 |
| fgl1 | 0.146 | ptmaa | -0.055 |
| lamc3 | 0.146 | lhx6 | -0.053 |
| CR855375.3 | 0.144 | dlx4a | -0.053 |
| bhmt | 0.142 | dlx1a | -0.053 |
| twist3 | 0.140 | fzd4 | -0.052 |
| alx4a | 0.139 | epha4b | -0.052 |
| zgc:114181 | 0.136 | sost | -0.051 |
| fstl3 | 0.134 | mia | -0.051 |
| ca6 | 0.133 | wwp2 | -0.050 |
| wnt11r | 0.131 | anxa1a | -0.050 |
| bambia | 0.129 | acana | -0.049 |
| BX324132.3 | 0.127 | foxd1 | -0.049 |
| zic1 | 0.127 | ptch2 | -0.048 |
| twist1a | 0.126 | cnmd | -0.048 |
| si:ch211-69b22.5 | 0.125 | snorc | -0.048 |
| adma | 0.125 | fzd8a | -0.048 |
| notum1a | 0.123 | dlx4b | -0.048 |
| axin2 | 0.121 | meis1b | -0.047 |
| gpr143 | 0.121 | col11a2 | -0.046 |
| clec3ba | 0.121 | cxcl12b | -0.046 |