| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| BX469902.1 | 0.319 | XLOC-003689 | -0.089 |
| zic2a | 0.289 | si:ch211-222l21.1 | -0.078 |
| zic1 | 0.281 | ptmab | -0.074 |
| zic5 | 0.272 | si:ch73-21g5.7 | -0.072 |
| si:ch211-69b22.5 | 0.267 | si:ch211-57n23.4 | -0.072 |
| atoh1c | 0.242 | cdkn1ca | -0.072 |
| zic4 | 0.240 | sb:cb81 | -0.069 |
| rspo1 | 0.230 | elavl3 | -0.068 |
| wnt10b | 0.196 | hoxb9a | -0.068 |
| zic6 | 0.188 | dlb | -0.068 |
| gdf10a | 0.181 | si:ch73-386h18.1 | -0.066 |
| zic3 | 0.169 | nes | -0.064 |
| rspo2 | 0.153 | ntn1a | -0.063 |
| fabp11a | 0.149 | chd7 | -0.063 |
| lmx1a | 0.144 | nr2f6b | -0.063 |
| bmper | 0.138 | sox11b | -0.062 |
| rspo3 | 0.135 | myt1a | -0.062 |
| gdf7 | 0.135 | tmeff1b | -0.062 |
| BX005454.1 | 0.134 | myt1b | -0.062 |
| fabp7b | 0.134 | hnrnpaba | -0.061 |
| wls | 0.133 | her12 | -0.061 |
| adamtsl5 | 0.133 | pou3f1 | -0.060 |
| cdon | 0.133 | sox3 | -0.060 |
| bmp6 | 0.128 | hoxb3a | -0.059 |
| si:dkey-183j2.10 | 0.122 | notch1a | -0.059 |
| atoh8 | 0.121 | ebf2 | -0.058 |
| wnt1 | 0.120 | tp53inp2 | -0.057 |
| si:ch211-66e2.5 | 0.120 | CABZ01075068.1 | -0.057 |
| nfia | 0.115 | h3f3d | -0.057 |
| fzd10 | 0.113 | trim71 | -0.057 |
| mdkb | 0.112 | hmgn6 | -0.056 |
| msx1b | 0.110 | robo3 | -0.056 |
| podxl | 0.110 | LOC798783 | -0.056 |
| bmp4 | 0.110 | lin28a | -0.056 |
| msx3 | 0.108 | marcksb | -0.055 |