| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.312 | tbxta | -0.384 |
| glulb | 0.308 | cdx4 | -0.327 |
| cxcr4b | 0.305 | eve1 | -0.314 |
| blf | 0.299 | wnt11f2 | -0.306 |
| inka1a | 0.296 | hes6 | -0.291 |
| sox3 | 0.290 | msgn1 | -0.287 |
| shisa2a | 0.280 | BX927327.1 | -0.282 |
| vgll4l | 0.271 | apoc1 | -0.280 |
| zgc:173742 | 0.265 | mespab | -0.278 |
| stk35l | 0.262 | sp5a | -0.278 |
| acp5a | 0.248 | lhx1a | -0.271 |
| pttg1 | 0.244 | wu:fb97g03 | -0.265 |
| cxcr4a | 0.243 | wnt5b | -0.261 |
| si:ch211-173m16.2 | 0.243 | sebox | -0.257 |
| zgc:100951 | 0.240 | osr1 | -0.256 |
| spink2.1 | 0.240 | efnb2b | -0.256 |
| mkrn4 | 0.238 | gata5 | -0.253 |
| cldnd | 0.234 | gata6 | -0.250 |
| rbm7 | 0.234 | im:7138239 | -0.237 |
| epcam | 0.234 | aldh1a2 | -0.236 |
| si:dkey-11o15.10 | 0.233 | ism1 | -0.236 |
| ccna2 | 0.231 | dkk1b | -0.236 |
| ccna1 | 0.229 | ndr2 | -0.235 |
| sec61b | 0.225 | FP102169.1 | -0.232 |
| zgc:56676 | 0.225 | zic2a | -0.227 |
| dctpp1 | 0.222 | tpbga | -0.223 |
| ctsla | 0.221 | zswim5 | -0.222 |
| zgc:113424 | 0.221 | NC-002333.4 | -0.219 |
| cdca7a | 0.219 | serpinh1b | -0.215 |
| mex3b | 0.217 | p4ha2 | -0.214 |
| rcor1 | 0.215 | pitx2 | -0.214 |
| lamp2 | 0.213 | notum1a | -0.210 |
| abhd10b | 0.213 | kirrel3l | -0.210 |
| gpatch4 | 0.213 | rpl11 | -0.207 |
| gapdh | 0.212 | efnb2a | -0.205 |