| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx1b | 0.318 | gpm6aa | -0.104 |
| krt18a.1 | 0.266 | nova1 | -0.087 |
| gdf10a | 0.258 | tuba1c | -0.085 |
| msx2b | 0.241 | si:dkey-276j7.1 | -0.084 |
| nog1 | 0.236 | elavl3 | -0.084 |
| zic2b | 0.234 | si:ch73-386h18.1 | -0.083 |
| msx3 | 0.229 | nova2 | -0.081 |
| zic5 | 0.225 | lhx1a | -0.081 |
| zic2a | 0.224 | si:ch73-30b17.2 | -0.074 |
| krt8 | 0.218 | rtn1a | -0.074 |
| lamb1a | 0.218 | stxbp1a | -0.073 |
| wnt10b | 0.216 | pou3f3b | -0.072 |
| apoc1 | 0.215 | slc1a2b | -0.071 |
| olig3 | 0.211 | stx1b | -0.070 |
| col12a1a | 0.208 | tmsb | -0.070 |
| BX248318.1 | 0.208 | gapdhs | -0.069 |
| adamtsl5 | 0.208 | lhx5 | -0.068 |
| pmp22a | 0.196 | thsd7aa | -0.068 |
| eve1 | 0.186 | dbx1a | -0.068 |
| bcam | 0.185 | gng2 | -0.068 |
| col5a2a | 0.185 | dbx1b | -0.068 |
| atoh1a | 0.185 | fabp3 | -0.067 |
| lmx1a | 0.180 | csdc2a | -0.067 |
| gdf6a | 0.179 | sox21a | -0.066 |
| crabp2a | 0.173 | myt1b | -0.066 |
| SPATA1 | 0.173 | rnasekb | -0.065 |
| rspo3 | 0.172 | aldocb | -0.065 |
| si:dkeyp-110a12.4 | 0.171 | scrt2 | -0.065 |
| frem3 | 0.171 | mab21l2 | -0.065 |
| wls | 0.167 | si:ch211-137a8.4 | -0.065 |
| cdon | 0.165 | cplx2l | -0.064 |
| smkr1 | 0.163 | cplx2 | -0.064 |
| hnf1ba | 0.163 | sp8b | -0.064 |
| XLOC-042222 | 0.162 | tmeff1b | -0.063 |
| si:dkeyp-69c1.9 | 0.161 | snap25a | -0.063 |