Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pitx3 | 0.679 | ptmab | -0.223 |
| foxe3 | 0.652 | ptmaa | -0.196 |
| sparcl1 | 0.601 | hmgn6 | -0.159 |
| mgarp | 0.568 | ckbb | -0.151 |
| slc7a11 | 0.565 | hmgb1a | -0.147 |
| gja8b | 0.537 | tuba1c | -0.147 |
| rbm24a | 0.520 | fabp7a | -0.137 |
| col28a1a | 0.517 | gpm6aa | -0.132 |
| si:ch211-219a15.3 | 0.491 | h2afva | -0.127 |
| prox2 | 0.487 | si:ch211-137a8.4 | -0.127 |
| LOC110438076 | 0.468 | si:ch73-1a9.3 | -0.122 |
| tgfb3 | 0.456 | tuba1a | -0.122 |
| s1pr3a | 0.456 | gpm6ab | -0.122 |
| slc3a2a | 0.425 | marcksl1b | -0.119 |
| col4a4 | 0.417 | tmsb4x | -0.118 |
| fgfrl1b | 0.414 | cadm3 | -0.117 |
| col28a1b | 0.409 | nova2 | -0.105 |
| col4a3 | 0.405 | anp32e | -0.103 |
| spon1b | 0.404 | mdkb | -0.101 |
| vcana | 0.402 | hmgb1b | -0.094 |
| otc | 0.392 | fabp3 | -0.094 |
| tinagl1 | 0.386 | epb41a | -0.094 |
| fabp11a | 0.380 | rorb | -0.093 |
| igfbp2a | 0.376 | marcksb | -0.092 |
| cps1 | 0.374 | h3f3c | -0.090 |
| FO681288.1 | 0.364 | snap25b | -0.088 |
| crybb1 | 0.349 | hnrnpa0a | -0.087 |
| scinla | 0.346 | ubc | -0.087 |
| mafba | 0.344 | atp6v0cb | -0.086 |
| si:dkey-164f24.2 | 0.335 | foxg1b | -0.085 |
| sox1b | 0.333 | si:dkey-56m19.5 | -0.085 |
| zgc:55262 | 0.333 | CR383676.1 | -0.084 |
| endouc | 0.328 | rtn1a | -0.083 |
| lim2.1 | 0.327 | cspg5a | -0.083 |
| gja8a | 0.323 | rnasekb | -0.082 |