Gene expression UMAP
Other cell groups
all cells |
blastomeres |
PGCs |
endoderm |
axial mesoderm |
muscle  |
mural cells / non-skeletal muscle  |
mesenchyme  |
hematopoietic / vasculature  |
pronephros  |
neural |
spinal cord / glia |
eye |
taste / olfactory |
otic / lateral line |
epidermis |
periderm |
fin |
ionocytes / mucous |
pigment cells |
Expression by stage/cluster
Correlated gene expression
| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pax1b | 0.317 | cyt1 | -0.200 |
| pax1a | 0.308 | krt4 | -0.184 |
| si:dkey-43p13.5 | 0.248 | cyt1l | -0.175 |
| nanos1 | 0.178 | spaca4l | -0.165 |
| cxcl12b | 0.173 | pfn1 | -0.152 |
| rspo3 | 0.164 | krt5 | -0.137 |
| ackr3b | 0.163 | zgc:175088 | -0.123 |
| vgll2a | 0.161 | krtt1c19e | -0.122 |
| hoxa2b | 0.160 | si:dkey-16p21.8 | -0.121 |
| foxl2b | 0.156 | col1a2 | -0.120 |
| fgf3 | 0.155 | col11a1a | -0.119 |
| isl1 | 0.154 | col2a1b | -0.116 |
| six1b | 0.150 | col1a1a | -0.116 |
| barx1 | 0.141 | s100a10b | -0.114 |
| ntn1a | 0.140 | actb2 | -0.113 |
| pcdh7b | 0.139 | rbp4 | -0.113 |
| endouc | 0.139 | thy1 | -0.113 |
| crip1 | 0.138 | postnb | -0.112 |
| fgf20b | 0.136 | tmsb1 | -0.111 |
| nkx3.3 | 0.136 | si:dkey-33c14.3 | -0.111 |
| ptprfa | 0.135 | col1a1b | -0.110 |
| fgf24 | 0.134 | lgals1l1 | -0.109 |
| foxa2 | 0.134 | col18a1a | -0.108 |
| vegfaa | 0.133 | ecrg4b | -0.104 |
| fgfrl1a | 0.133 | actb1 | -0.104 |
| nkx3.2 | 0.129 | aep1 | -0.103 |
| si:dkey-261h17.1 | 0.128 | tfap2a | -0.103 |
| fgfrl1b | 0.126 | cap1 | -0.102 |
| six1a | 0.126 | kera | -0.099 |
| tmem88b | 0.126 | col5a1 | -0.099 |
| hbegfb | 0.123 | tuba8l2 | -0.099 |
| eya1 | 0.123 | zgc:136930 | -0.098 |
| rergla | 0.123 | ptgdsb.1 | -0.098 |
| fgf17 | 0.122 | hdlbpa | -0.098 |
| krt18a.1 | 0.121 | col7a1 | -0.097 |