| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tbxta | 0.769 | sox3 | -0.532 |
| sebox | 0.568 | cxcr4b | -0.331 |
| BX927327.1 | 0.560 | sox19a | -0.321 |
| osr1 | 0.555 | cited4b | -0.306 |
| ndr2 | 0.515 | inka1a | -0.275 |
| hes6 | 0.510 | id1 | -0.261 |
| eve1 | 0.494 | cxcr4a | -0.260 |
| cdx4 | 0.490 | shisa2a | -0.255 |
| fgf8a | 0.487 | asb11 | -0.239 |
| tpbga | 0.476 | zic2b | -0.232 |
| mespab | 0.464 | gpd1b | -0.216 |
| wnt5b | 0.456 | si:ch1073-80i24.3 | -0.206 |
| lft1 | 0.438 | foxd5 | -0.198 |
| wu:fb97g03 | 0.438 | si:ch211-170d8.2 | -0.189 |
| fscn1a | 0.434 | zgc:64022 | -0.185 |
| lhx1a | 0.428 | sfrp1a | -0.180 |
| cyp27c1 | 0.410 | foxh1 | -0.179 |
| FP102169.1 | 0.405 | lfng | -0.172 |
| notum1a | 0.390 | si:ch211-173m16.2 | -0.165 |
| tbx16 | 0.389 | pkdccb | -0.158 |
| p4ha2 | 0.378 | kazald2 | -0.153 |
| aldh1a2 | 0.376 | glulb | -0.151 |
| zic2a | 0.369 | gadd45ga | -0.148 |
| aplnrb | 0.368 | sb:cb81 | -0.146 |
| dkk1b | 0.366 | pfkfb4b | -0.146 |
| sp5a | 0.346 | aldob | -0.142 |
| ddit4 | 0.343 | snai2 | -0.141 |
| ndr1 | 0.338 | si:dkey-11o15.10 | -0.139 |
| zswim5 | 0.332 | fgfr4 | -0.139 |
| rasgef1ba | 0.332 | stk35l | -0.136 |
| msgn1 | 0.331 | her3 | -0.136 |
| arl4ab | 0.330 | LOC101885477 | -0.134 |
| si:dkeyp-2e4.3 | 0.324 | LOC108190024 | -0.133 |
| fgf3 | 0.319 | tubb4b | -0.131 |
| foxa | 0.316 | zgc:100951 | -0.131 |