| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| msx2b | 0.224 | elavl3 | -0.072 |
| sp5l | 0.190 | nova2 | -0.066 |
| noto | 0.172 | tuba1c | -0.064 |
| msx1b | 0.164 | rtn1a | -0.062 |
| nradd | 0.163 | myt1b | -0.060 |
| zic2a | 0.158 | tmsb4x | -0.059 |
| fgf8a | 0.155 | gpm6aa | -0.059 |
| ednrab | 0.140 | hapln1a | -0.058 |
| snai1b | 0.138 | gng2 | -0.056 |
| lrrc17 | 0.136 | gng3 | -0.054 |
| zic5 | 0.133 | elavl4 | -0.052 |
| eve1 | 0.131 | tmsb | -0.052 |
| nid2a | 0.128 | vim | -0.051 |
| tbxta | 0.128 | fabp3 | -0.050 |
| hspb1 | 0.127 | tubb5 | -0.050 |
| XLOC-042222 | 0.122 | zfhx3 | -0.049 |
| cdx1a | 0.121 | hmgb3a | -0.049 |
| tfec | 0.119 | vamp2 | -0.049 |
| cdh6 | 0.117 | calm1a | -0.049 |
| nkx1.2la | 0.116 | stx1b | -0.049 |
| pou5f3 | 0.116 | si:ch73-386h18.1 | -0.048 |
| zic2b | 0.110 | marcksl1b | -0.048 |
| notum1a | 0.108 | stxbp1a | -0.048 |
| cdx4 | 0.106 | snap25a | -0.048 |
| atoh1a | 0.106 | si:dkey-276j7.1 | -0.048 |
| XLOC-001603 | 0.105 | si:dkey-56m19.5 | -0.047 |
| atoh8 | 0.104 | rnasekb | -0.047 |
| apoc1 | 0.102 | sncb | -0.046 |
| BX248318.1 | 0.102 | gpm6ab | -0.046 |
| adgrg4b | 0.100 | cplx2 | -0.046 |
| znfl1k | 0.098 | syt2a | -0.046 |
| BX469902.1 | 0.094 | nova1 | -0.046 |
| msx1a | 0.093 | scrt2 | -0.046 |
| BX005254.3 | 0.093 | rtn1b | -0.046 |
| gdf10a | 0.093 | si:dkeyp-75h12.5 | -0.045 |