| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| tlx3b | 0.437 | id1 | -0.083 |
| otpa | 0.247 | cldn5a | -0.081 |
| pou4f2 | 0.213 | sox3 | -0.080 |
| mab21l1 | 0.195 | mdka | -0.071 |
| tfap2a | 0.181 | XLOC-003690 | -0.070 |
| lmx1bb | 0.169 | msi1 | -0.069 |
| nrn1a | 0.161 | msna | -0.068 |
| tfap2e | 0.161 | cd82a | -0.067 |
| pou4f1 | 0.158 | sdc4 | -0.066 |
| ebf3a | 0.148 | hmgb2a | -0.065 |
| isl1 | 0.147 | notch3 | -0.063 |
| drgx | 0.146 | si:ch73-281n10.2 | -0.062 |
| scrt2 | 0.140 | sox19a | -0.061 |
| uncx | 0.139 | vamp3 | -0.060 |
| sox4a | 0.129 | fabp7a | -0.060 |
| uncx4.1 | 0.128 | atp1a1b | -0.058 |
| hoxb9a | 0.126 | cd81a | -0.058 |
| rbfox3b | 0.125 | si:ch73-265d7.2 | -0.057 |
| mab21l2 | 0.122 | sox2 | -0.056 |
| elavl3 | 0.121 | fosab | -0.056 |
| zgc:162707 | 0.119 | her15.1 | -0.055 |
| olfm1b | 0.118 | cd63 | -0.055 |
| si:ch73-386h18.1 | 0.117 | qkia | -0.055 |
| khdrbs2 | 0.116 | pcna | -0.054 |
| anos1a | 0.112 | psat1 | -0.054 |
| LOC100537384 | 0.112 | COX7A2 (1 of many) | -0.052 |
| adcyap1b | 0.111 | dut | -0.051 |
| zfhx3 | 0.111 | gpm6bb | -0.051 |
| myt1b | 0.111 | atp1b4 | -0.051 |
| ebf1a | 0.111 | btg2 | -0.051 |
| lbx1a | 0.110 | tuba8l | -0.051 |
| tmsb | 0.109 | actb1 | -0.050 |
| nell2b | 0.108 | XLOC-003689 | -0.050 |
| hoxb8a | 0.107 | her12 | -0.050 |
| pik3r3b | 0.106 | her8a | -0.050 |