| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| pou4f1 | 0.369 | cldn5a | -0.135 |
| kctd15a | 0.315 | sox3 | -0.115 |
| hmx3a | 0.308 | si:ch73-265d7.2 | -0.113 |
| pou4f2 | 0.289 | sox19a | -0.112 |
| KCTD15 | 0.261 | XLOC-003690 | -0.110 |
| hmx2 | 0.261 | mdka | -0.109 |
| ednrab | 0.253 | msna | -0.108 |
| foxd3 | 0.252 | msi1 | -0.105 |
| XLOC-023447 | 0.244 | sdc4 | -0.104 |
| tfap2b | 0.240 | notch3 | -0.102 |
| nrn1a | 0.217 | gfap | -0.101 |
| uncx | 0.217 | id1 | -0.100 |
| ebf3a | 0.213 | sparc | -0.097 |
| snai1b | 0.213 | XLOC-003689 | -0.097 |
| uncx4.1 | 0.194 | cd82a | -0.094 |
| scrt1a | 0.187 | ptch2 | -0.091 |
| lhx1a | 0.185 | her15.1 | -0.090 |
| tfec | 0.185 | ntn1a | -0.087 |
| lhx5 | 0.183 | metrnla | -0.087 |
| scrt2 | 0.182 | sox2 | -0.084 |
| tlx2 | 0.181 | fabp7a | -0.083 |
| BX248318.1 | 0.179 | her8a | -0.083 |
| zfhx3 | 0.178 | rfx4 | -0.083 |
| tlx3b | 0.173 | atp1a1b | -0.082 |
| hoxb9a | 0.169 | vamp3 | -0.081 |
| LOC100537384 | 0.165 | plp1a | -0.081 |
| nhlh2 | 0.165 | cd63 | -0.081 |
| zgc:77784 | 0.162 | fgfr3 | -0.081 |
| atcaya | 0.160 | endouc | -0.080 |
| stmn1b | 0.159 | sp8b | -0.080 |
| si:ch73-386h18.1 | 0.158 | qki2 | -0.080 |
| hoxa9a | 0.156 | fosab | -0.080 |
| tfap2e | 0.156 | COX7A2 (1 of many) | -0.079 |
| tmeff1b | 0.156 | si:ch211-212k18.5 | -0.078 |
| rbfox3a | 0.153 | zgc:165461 | -0.077 |