| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| wnt11f2 | 0.769 | sox3 | -0.538 |
| eve1 | 0.640 | cited4b | -0.384 |
| cdx4 | 0.625 | cxcr4b | -0.335 |
| hes6 | 0.606 | inka1a | -0.328 |
| BX927327.1 | 0.583 | sox19a | -0.324 |
| sebox | 0.580 | shisa2a | -0.324 |
| osr1 | 0.544 | cxcr4a | -0.278 |
| wnt5b | 0.528 | asb11 | -0.235 |
| tpbga | 0.515 | zic2b | -0.223 |
| ndr2 | 0.503 | sfrp1a | -0.219 |
| mespab | 0.498 | gpd1b | -0.219 |
| wu:fb97g03 | 0.486 | zgc:64022 | -0.215 |
| fgf8a | 0.468 | foxd5 | -0.214 |
| tbx16 | 0.455 | si:ch211-173m16.2 | -0.214 |
| fscn1a | 0.449 | si:ch211-170d8.2 | -0.211 |
| notum1a | 0.447 | lfng | -0.210 |
| p4ha2 | 0.441 | id1 | -0.205 |
| lhx1a | 0.426 | si:ch1073-80i24.3 | -0.200 |
| lft1 | 0.424 | zgc:100951 | -0.200 |
| FP102169.1 | 0.423 | stk35l | -0.200 |
| cyp27c1 | 0.421 | foxh1 | -0.192 |
| aldh1a2 | 0.413 | pkdccb | -0.190 |
| zic2a | 0.392 | si:dkey-11o15.10 | -0.189 |
| rasgef1ba | 0.381 | blf | -0.186 |
| im:7138239 | 0.377 | kazald2 | -0.184 |
| zswim5 | 0.377 | nanog | -0.178 |
| dkk1b | 0.376 | snai2 | -0.175 |
| sp5a | 0.369 | zgc:113424 | -0.175 |
| aplnrb | 0.366 | glulb | -0.175 |
| ddit4 | 0.363 | thy1 | -0.171 |
| msgn1 | 0.363 | cldnd | -0.170 |
| apoc1 | 0.360 | si:rp71-45k5.2 | -0.170 |
| si:dkeyp-2e4.3 | 0.352 | tubb4b | -0.168 |
| vent | 0.340 | sox11a | -0.164 |
| ved | 0.332 | LOC101885477 | -0.164 |