| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| nanog | 0.141 | NC-002333.4 | -0.151 |
| si:dkey-68o6.5 | 0.138 | hmga1a | -0.085 |
| rbm7 | 0.134 | eef1a1l1 | -0.080 |
| acp5a | 0.129 | hmgb2a | -0.075 |
| cldnd | 0.129 | si:ch211-222l21.1 | -0.073 |
| ccna1 | 0.125 | si:ch73-1a9.3 | -0.067 |
| zgc:173742 | 0.124 | nucks1a | -0.066 |
| ttf1 | 0.122 | ptmab | -0.066 |
| spink2.1 | 0.122 | hspb1 | -0.060 |
| dnajc1 | 0.121 | akap12b | -0.056 |
| gpatch4 | 0.121 | dynll1 | -0.055 |
| cdca7a | 0.120 | gata5 | -0.055 |
| ccna2 | 0.117 | rplp1 | -0.054 |
| ctss2.1 | 0.116 | hmgn6 | -0.054 |
| ccnb1 | 0.116 | efna1a | -0.054 |
| stk35l | 0.116 | anp32e | -0.052 |
| ctsba | 0.116 | pitx2 | -0.052 |
| slc25a25a | 0.115 | stm | -0.052 |
| s100a1 | 0.114 | hnrnpa0b | -0.051 |
| mkrn4 | 0.114 | npm1a | -0.050 |
| AL935174.5 | 0.113 | krt18a.1 | -0.050 |
| gtf2a1 | 0.113 | lhx1a | -0.049 |
| zgc:77118 | 0.113 | crabp2b | -0.048 |
| hdgfl2 | 0.113 | dkk1b | -0.048 |
| gdf3 | 0.113 | sox2 | -0.048 |
| rcor1 | 0.112 | kif20bb | -0.048 |
| nasp | 0.112 | rps7 | -0.047 |
| map7d1a | 0.112 | si:ch211-113a14.18 | -0.047 |
| blf | 0.111 | si:ch211-152c2.3 | -0.046 |
| zgc:113424 | 0.111 | elovl6 | -0.046 |
| glulb | 0.111 | LOC108183629 | -0.046 |
| naa10 | 0.111 | msgn1 | -0.045 |
| npc2 | 0.110 | hmgn2 | -0.045 |
| pinx1 | 0.109 | ism1 | -0.045 |
| cdk8 | 0.109 | si:dkey-108k21.10 | -0.045 |