| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| shha | 0.444 | cyt1 | -0.419 |
| foxa2 | 0.406 | cyt1l | -0.354 |
| pitx1 | 0.392 | pfn1 | -0.342 |
| shhb | 0.372 | krt5 | -0.341 |
| pitx2 | 0.341 | si:dkey-16p21.8 | -0.329 |
| fgfrl1b | 0.334 | krt4 | -0.318 |
| ptch2 | 0.331 | spaca4l | -0.314 |
| krt18a.1 | 0.322 | krtt1c19e | -0.308 |
| sox19b | 0.309 | col11a1a | -0.302 |
| sox3 | 0.307 | rbp4 | -0.299 |
| hmgn2 | 0.301 | col1a2 | -0.299 |
| fzd5 | 0.296 | col2a1b | -0.295 |
| fxyd1 | 0.288 | ecrg4b | -0.291 |
| fgfrl1a | 0.285 | col1a1b | -0.291 |
| h3f3a | 0.281 | zgc:175088 | -0.285 |
| ephb4a | 0.281 | col1a1a | -0.281 |
| ociad2 | 0.278 | si:dkey-33c14.3 | -0.280 |
| inhbaa | 0.277 | lgals1l1 | -0.268 |
| barx1 | 0.274 | thy1 | -0.266 |
| hmgb2b | 0.273 | actb2 | -0.264 |
| hmgb1b | 0.272 | aep1 | -0.249 |
| nkx3.3 | 0.269 | sparc | -0.248 |
| si:dkey-208c12.2 | 0.268 | col14a1b | -0.247 |
| fzd8a | 0.266 | zgc:136930 | -0.246 |
| foxa | 0.263 | actb1 | -0.244 |
| foxa1 | 0.260 | cotl1 | -0.236 |
| sostdc1a | 0.258 | col5a1 | -0.235 |
| si:ch211-288g17.3 | 0.245 | cap1 | -0.235 |
| rarga | 0.242 | cfl1l | -0.235 |
| h2afvb | 0.238 | wu:fa03e10 | -0.232 |
| seta | 0.235 | postnb | -0.231 |
| efnb3b | 0.235 | si:dkey-102c8.3 | -0.231 |
| ackr3b | 0.235 | s100a10b | -0.231 |
| h2afva | 0.233 | tmsb1 | -0.231 |
| khdrbs1a | 0.232 | tmsb4x | -0.231 |