| Positive correlation | Negative correlation | ||
| Gene | r | Gene | r |
| lhx1a | 0.420 | sox3 | -0.319 |
| gata5 | 0.403 | id1 | -0.261 |
| msgn1 | 0.400 | sox19a | -0.258 |
| FP102169.1 | 0.395 | aldob | -0.235 |
| mespab | 0.386 | hmgb2a | -0.220 |
| foxa | 0.375 | zic2b | -0.211 |
| gata6 | 0.373 | si:ch211-152c2.3 | -0.202 |
| dkk1b | 0.370 | cxcr4b | -0.200 |
| osr1 | 0.354 | sox2 | -0.199 |
| cth1 | 0.349 | asb11 | -0.199 |
| efnb2b | 0.348 | si:ch73-1a9.3 | -0.193 |
| pitx2 | 0.344 | si:ch1073-80i24.3 | -0.184 |
| ism1 | 0.329 | si:ch211-222l21.1 | -0.182 |
| aplnrb | 0.329 | si:dkey-56m19.5 | -0.177 |
| sp5a | 0.320 | foxd5 | -0.170 |
| kirrel3l | 0.319 | pfkfb4b | -0.164 |
| dusp4 | 0.312 | polr3gla | -0.162 |
| trib3 | 0.310 | alcamb | -0.161 |
| lft2 | 0.309 | her3 | -0.160 |
| zic2a | 0.308 | sb:cb81 | -0.160 |
| mespaa | 0.303 | anp32a | -0.150 |
| fscn1a | 0.301 | hnrnpa0b | -0.149 |
| plekhn1 | 0.299 | atp1b1a | -0.148 |
| rnd1b | 0.298 | add3b | -0.141 |
| efnb2a | 0.296 | anp32e | -0.140 |
| BX927327.1 | 0.296 | anp32b | -0.136 |
| ndr2 | 0.289 | crabp2b | -0.134 |
| fgf8a | 0.285 | pkdccb | -0.131 |
| si:dkey-261j4.5 | 0.281 | dynll1 | -0.121 |
| efna1a | 0.281 | hspb1 | -0.121 |
| aldh1a2 | 0.281 | prdm14 | -0.118 |
| aplnra | 0.280 | foxd3 | -0.118 |
| flrt3 | 0.275 | npm1a | -0.116 |
| lft1 | 0.274 | rplp1 | -0.107 |
| cyp27c1 | 0.270 | her8a | -0.107 |